Detailed information of TA system TA195580

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): higBA (relBE)/HigB-HigA
• Location: 4535882..4536612
• Replicon: chromosome
• Accession: NZ_CP071192
• Organism: Serratia marcescens subsp. marcescens ATCC 13880 substr. Sm_S60_jyu2015

Toxin (Protein)

• Gene name: higB
• Uniprot ID: A0A8B4GR63
• Locus tag: J0F87_RS21695
• Protein ID: WP_004937033.1
• Coordinates: 4535882..4536193 (+)
• Length: 104 a.a.

Antitoxin (Protein)

• Gene name: higA
• Uniprot ID: -
• Locus tag: J0F87_RS21700
• Protein ID: WP_015379178.1
• Coordinates: 4536190..4536612 (+)
• Length: 141 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
J0F87_RS21665	4531195..4531920	+	726	WP_004937040.1	LPS export ABC transporter ATP-binding protein	-
J0F87_RS21670	4531973..4533406	+	1434	WP_021505109.1	RNA polymerase factor sigma-54	-
J0F87_RS21675	4533430..4533717	+	288	WP_004937038.1	ribosome hibernation promoting factor	-
J0F87_RS21680	4533873..4534334	+	462	WP_016930212.1	PTS IIA-like nitrogen regulatory protein PtsN	-
J0F87_RS21685	4534464..4535318	+	855	WP_015379177.1	RNase adapter RapZ	-
J0F87_RS21690	4535315..4535587	+	273	WP_004937034.1	PTS phosphocarrier protein NPr	-
J0F87_RS21695	4535882..4536193	+	312	WP_004937033.1	type II toxin-antitoxin system HigB family toxin	Toxin
J0F87_RS21700	4536190..4536612	+	423	WP_015379178.1	helix-turn-helix domain-containing protein	Antitoxin
J0F87_RS21705	4536616..4538532	-	1917	WP_033639303.1	BglG family transcription antiterminator	-
J0F87_RS21710	4538584..4539798	-	1215	WP_033639302.1	lactonase family protein	-
J0F87_RS21715	4540075..4540815	-	741	WP_016930215.1	KDGP aldolase family protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, mRNA interferase HigB (20-93)

Antitoxin

• Cro/C1-type helix-turn-helix domain (81-135)

Sequences

Toxin

Protein

• Length: 104 a.a.
• Molecular weight: 12289.14 Da
• Isoelectric Point: 10.0957

>T195580 WP_004937033.1 NZ_CP071192:4535882-4536193 [Serratia marcescens subsp. marcescens ATCC 13880]
MHIISREPFNNATKQYPNEATALEAIYKALRRGEFRTPDELKALFPSLDRMKYKEKWWVIDVGGNHLRILFFASFETQKV
FIKHIVSHAEYDKLMQHYRRSSS

Nucleotide

• Length: 312 bp

>T195580 NZ_CP071192:4535882-4536193 [Serratia marcescens subsp. marcescens ATCC 13880]
ATGCATATCATTTCCAGGGAACCGTTCAATAACGCAACGAAGCAATATCCCAATGAAGCCACTGCTCTCGAGGCCATTTA
TAAAGCATTGCGACGGGGCGAGTTCCGCACGCCGGACGAGTTAAAAGCGCTTTTTCCTTCGCTCGATCGTATGAAATACA
AAGAGAAATGGTGGGTCATTGACGTCGGCGGCAACCACCTGCGGATCTTGTTCTTTGCCAGCTTCGAGACACAGAAAGTC
TTCATAAAGCATATCGTTAGCCACGCCGAATACGACAAGCTGATGCAGCACTATCGAAGGAGTTCATCATGA

Antitoxin

Protein

• Length: 141 a.a.
• Molecular weight: 15784.13 Da
• Isoelectric Point: 5.2139

>AT195580 WP_015379178.1 NZ_CP071192:4536190-4536612 [Serratia marcescens subsp. marcescens ATCC 13880]
MITDAIKAADALLRAVPLLQGSRAQQDYREALELVEYLLENDEHHPLIDMLAKKIAEYEDNSAEFTAFNQRIAQLPQGVA
ALRVLMEQHQLSQSDFEHEIGKKSLVNQILNGKRSLTIPHIMALAKRFNLPPALFLPEAD

Nucleotide

• Length: 423 bp

>AT195580 NZ_CP071192:4536190-4536612 [Serratia marcescens subsp. marcescens ATCC 13880]
ATGATTACAGATGCCATTAAGGCGGCCGATGCGCTACTGCGCGCCGTGCCCTTGTTGCAGGGCAGCCGCGCTCAGCAAGA
CTACCGGGAAGCGCTTGAATTGGTGGAATACCTGCTGGAAAACGACGAACACCATCCGCTGATTGACATGCTGGCAAAAA
AGATCGCCGAATATGAAGACAACAGCGCCGAATTTACCGCATTCAACCAGCGTATCGCCCAGTTACCACAGGGGGTAGCC
GCGCTTCGCGTCCTTATGGAACAGCACCAACTCAGCCAAAGTGATTTTGAACATGAGATCGGTAAAAAGTCGTTGGTTAA
CCAAATCCTGAACGGTAAAAGATCGCTGACCATTCCGCACATTATGGCGCTGGCCAAGCGTTTCAATCTGCCCCCGGCCC
TGTTCCTGCCGGAAGCGGATTAG

Structures

Toxin

• AlphaFold DB: A0A8B4GR63