Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/COG4683-HTH_37 |
Location | 357062..357708 | Replicon | chromosome |
Accession | NZ_CP071027 | ||
Organism | Klebsiella pneumoniae strain KP-1Pi |
Toxin (Protein)
Gene name | higB | Uniprot ID | A0A4S7KZ03 |
Locus tag | HZC88_RS01630 | Protein ID | WP_032433636.1 |
Coordinates | 357062..357409 (+) | Length | 116 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | A0A4S7L580 |
Locus tag | HZC88_RS01635 | Protein ID | WP_019725405.1 |
Coordinates | 357409..357708 (+) | Length | 100 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
HZC88_RS01620 (352988) | 352988..354421 | + | 1434 | WP_032433640.1 | glycogen synthase GlgA | - |
HZC88_RS01625 (354439) | 354439..356886 | + | 2448 | WP_032433638.1 | glycogen phosphorylase | - |
HZC88_RS01630 (357062) | 357062..357409 | + | 348 | WP_032433636.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
HZC88_RS01635 (357409) | 357409..357708 | + | 300 | WP_019725405.1 | XRE family transcriptional regulator | Antitoxin |
HZC88_RS01640 (357771) | 357771..359279 | - | 1509 | WP_029602548.1 | glycerol-3-phosphate dehydrogenase | - |
HZC88_RS01645 (359484) | 359484..359813 | + | 330 | WP_002920552.1 | thiosulfate sulfurtransferase GlpE | - |
HZC88_RS01650 (359864) | 359864..360694 | + | 831 | WP_004151408.1 | rhomboid family intramembrane serine protease GlpG | - |
HZC88_RS01655 (360744) | 360744..361502 | + | 759 | WP_002920548.1 | DeoR/GlpR family transcriptional regulator | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 116 a.a. Molecular weight: 13500.51 Da Isoelectric Point: 6.2327
>T195115 WP_032433636.1 NZ_CP071027:357062-357409 [Klebsiella pneumoniae]
MWDVETTDTFDAWFELQSRALKEDMLATMLILSEFAPQLGRPYVDTVKDSTFQNMKELRVQHHGLPIRAFFAFDPLRKAI
VLCAGNKDGINEKRFYKEMITLADREFSQHLTKER
MWDVETTDTFDAWFELQSRALKEDMLATMLILSEFAPQLGRPYVDTVKDSTFQNMKELRVQHHGLPIRAFFAFDPLRKAI
VLCAGNKDGINEKRFYKEMITLADREFSQHLTKER
Download Length: 348 bp
>T195115 NZ_CP094322:c1820229-1820128 [Edwardsiella anguillarum]
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT
Antitoxin
Download Length: 100 a.a. Molecular weight: 10775.53 Da Isoelectric Point: 9.7681
>AT195115 WP_019725405.1 NZ_CP071027:357409-357708 [Klebsiella pneumoniae]
MATLKELMAKQSPESQQRIAAKAAEIRQSVALNLLREELQMSQTEMAAAMGVKQPTIAKMEQTDNDPRLSTLKSYIAALG
GELSINVTLPTGKKVSFNL
MATLKELMAKQSPESQQRIAAKAAEIRQSVALNLLREELQMSQTEMAAAMGVKQPTIAKMEQTDNDPRLSTLKSYIAALG
GELSINVTLPTGKKVSFNL
Download Length: 300 bp
>AT195115 NZ_CP094322:1820126-1820236 [Edwardsiella anguillarum]
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A4S7KZ03 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A4S7L580 |