Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/- |
| Location | 3877984..3878642 | Replicon | chromosome |
| Accession | NZ_CP070980 | ||
| Organism | Pseudomonas rhodesiae strain AAMF24 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | A0A2G0X687 |
| Locus tag | JYG35_RS17465 | Protein ID | WP_034114384.1 |
| Coordinates | 3878298..3878642 (-) | Length | 115 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | JYG35_RS17460 | Protein ID | WP_034099046.1 |
| Coordinates | 3877984..3878301 (-) | Length | 106 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JYG35_RS17445 (JYG35_17445) | 3875897..3876748 | - | 852 | WP_034114387.1 | hypothetical protein | - |
| JYG35_RS26520 | 3876968..3877087 | + | 120 | Protein_3451 | IS5/IS1182 family transposase | - |
| JYG35_RS17450 (JYG35_17450) | 3877172..3877408 | - | 237 | WP_034099043.1 | YdaS family helix-turn-helix protein | - |
| JYG35_RS17455 (JYG35_17455) | 3877507..3877932 | + | 426 | WP_005789662.1 | helix-turn-helix domain-containing protein | - |
| JYG35_RS17460 (JYG35_17460) | 3877984..3878301 | - | 318 | WP_034099046.1 | transcriptional regulator | Antitoxin |
| JYG35_RS17465 (JYG35_17465) | 3878298..3878642 | - | 345 | WP_034114384.1 | toxin | Toxin |
| JYG35_RS17470 (JYG35_17470) | 3878765..3879568 | - | 804 | WP_034114382.1 | phage antirepressor KilAC domain-containing protein | - |
| JYG35_RS17475 (JYG35_17475) | 3879646..3879876 | - | 231 | WP_236238667.1 | DUF3077 domain-containing protein | - |
| JYG35_RS17480 (JYG35_17480) | 3879950..3880105 | - | 156 | WP_143506426.1 | Arc family DNA-binding protein | - |
| JYG35_RS17485 (JYG35_17485) | 3880250..3880681 | + | 432 | WP_052229582.1 | helix-turn-helix domain-containing protein | - |
| JYG35_RS17490 (JYG35_17490) | 3881170..3881802 | - | 633 | WP_143506428.1 | hypothetical protein | - |
| JYG35_RS17495 (JYG35_17495) | 3882003..3882476 | + | 474 | WP_034114380.1 | hypothetical protein | - |
| JYG35_RS17500 (JYG35_17500) | 3882582..3882869 | + | 288 | WP_034099056.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| JYG35_RS17505 (JYG35_17505) | 3882859..3883146 | + | 288 | WP_034099058.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 3869854..3890900 | 21046 | |
| - | flank | IS/Tn | - | - | 3876968..3877090 | 122 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 115 a.a. Molecular weight: 13172.02 Da Isoelectric Point: 9.6563
>T194899 WP_034114384.1 NZ_CP070980:c3878642-3878298 [Pseudomonas rhodesiae]
MKTVFFEMTSFTATVGDYLTDDEYRQLQTEMQANPEAGDVMPRTGGFRKLRWQDTRRGKGKRGGLRVIYYWLLNDGQFWM
FSIYDKDEMANLTAAQEKALKAAIDAELKKRGGK
MKTVFFEMTSFTATVGDYLTDDEYRQLQTEMQANPEAGDVMPRTGGFRKLRWQDTRRGKGKRGGLRVIYYWLLNDGQFWM
FSIYDKDEMANLTAAQEKALKAAIDAELKKRGGK
Download Length: 345 bp
>T194899 NZ_CP094167:576814-577080 [Helicobacter pylori]
GTGTTGAAACTCAATCTTAAAAAATCTTTTCAAAAAGATTTTGATAAATTACTTTTGAATGGGTTTGATGATAGCGTTTT
GAATGAAGTCATTCTAACCTTAAGAAAAAAAGAACCACTAGACCCACAATTTAAAGATCATGCCTTAAAAGGAAAGTGGA
AACCTTTTAGAGAATGCCACATCAAAGCTGATATTTTACTTGTGTATTTAGTGAAAGATGATGAGCTTATTTTAGTAAGG
TTAGGCAGTCATAGCGAGTTGTTTTAA
GTGTTGAAACTCAATCTTAAAAAATCTTTTCAAAAAGATTTTGATAAATTACTTTTGAATGGGTTTGATGATAGCGTTTT
GAATGAAGTCATTCTAACCTTAAGAAAAAAAGAACCACTAGACCCACAATTTAAAGATCATGCCTTAAAAGGAAAGTGGA
AACCTTTTAGAGAATGCCACATCAAAGCTGATATTTTACTTGTGTATTTAGTGAAAGATGATGAGCTTATTTTAGTAAGG
TTAGGCAGTCATAGCGAGTTGTTTTAA
Antitoxin
Download Length: 106 a.a. Molecular weight: 12040.96 Da Isoelectric Point: 10.1426
>AT194899 WP_034099046.1 NZ_CP070980:c3878301-3877984 [Pseudomonas rhodesiae]
MKKKRDLFAELMQGVNEMGEHRQGKITLRQYEVEALAPPEVTAAEIVSIRENLHMSQPVFARQIRTSPDTLKNWEQSKSK
PNAQAALLIKLVQRFPDMVERLNAV
MKKKRDLFAELMQGVNEMGEHRQGKITLRQYEVEALAPPEVTAAEIVSIRENLHMSQPVFARQIRTSPDTLKNWEQSKSK
PNAQAALLIKLVQRFPDMVERLNAV
Download Length: 318 bp
>AT194899 NZ_CP094167:576456-576833 [Helicobacter pylori]
ATGCCTAACTCTTCTGCCAAAAAAGACTACACACAATACAGCGAAAAACAGCTTTTTAACTTAATCAACCAATTAGAGCA
AAAAATCAAAAAGATGCAAAATGATAGAGTTTCTTTTAAAGAAAAAATGGCTAAAGAATTGGACAAAAGGGATCAAAACT
TTAAGGATAAAATAGACGCATTAAATGAACTCTTGCAAAAAATCAGCCAAGCTTTTGATAATAAAAGAGATTGTTGTTTG
GGGCGCAAGATTCCAAACCTTGAAACGCAACAAGCCATGAGAGATGCGTTAAACAAAGAAACCGATTTGATTGTTGATGA
TTTTTCTAGTTATAGCGATGAAAGAAAAAAGGCGTTAGGTGTTGAAACTCAATCTTAA
ATGCCTAACTCTTCTGCCAAAAAAGACTACACACAATACAGCGAAAAACAGCTTTTTAACTTAATCAACCAATTAGAGCA
AAAAATCAAAAAGATGCAAAATGATAGAGTTTCTTTTAAAGAAAAAATGGCTAAAGAATTGGACAAAAGGGATCAAAACT
TTAAGGATAAAATAGACGCATTAAATGAACTCTTGCAAAAAATCAGCCAAGCTTTTGATAATAAAAGAGATTGTTGTTTG
GGGCGCAAGATTCCAAACCTTGAAACGCAACAAGCCATGAGAGATGCGTTAAACAAAGAAACCGATTTGATTGTTGATGA
TTTTTCTAGTTATAGCGATGAAAGAAAAAAGGCGTTAGGTGTTGAAACTCAATCTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|