Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-YefM |
| Location | 4178436..4178938 | Replicon | chromosome |
| Accession | NZ_CP069882 | ||
| Organism | Escherichia coli strain FDAARGOS_1289 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | U9YDH0 |
| Locus tag | I6K19_RS20155 | Protein ID | WP_000767829.1 |
| Coordinates | 4178436..4178690 (-) | Length | 85 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | S1Q063 |
| Locus tag | I6K19_RS20160 | Protein ID | WP_001259255.1 |
| Coordinates | 4178687..4178938 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K19_RS20125 (4173451) | 4173451..4173678 | - | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| I6K19_RS20130 (4173692) | 4173692..4174750 | - | 1059 | WP_000492340.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| I6K19_RS20135 (4174929) | 4174929..4176287 | - | 1359 | WP_000019197.1 | putrescine/proton symporter PlaP | - |
| I6K19_RS20140 (4176277) | 4176277..4176339 | - | 63 | WP_010723108.1 | membrane protein YoeI | - |
| I6K19_RS20145 (4176554) | 4176554..4177483 | - | 930 | WP_000803360.1 | LysR substrate-binding domain-containing protein | - |
| I6K19_RS20150 (4177529) | 4177529..4178353 | - | 825 | WP_000754737.1 | SDR family oxidoreductase | - |
| I6K19_RS20155 (4178436) | 4178436..4178690 | - | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | Toxin |
| I6K19_RS20160 (4178687) | 4178687..4178938 | - | 252 | WP_001259255.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin |
| I6K19_RS20165 (4179221) | 4179221..4179271 | + | 51 | WP_001364200.1 | his operon leader peptide | - |
| I6K19_RS20170 (4179417) | 4179417..4180316 | + | 900 | WP_000131782.1 | ATP phosphoribosyltransferase | - |
| I6K19_RS20175 (4180322) | 4180322..4181626 | + | 1305 | WP_021547561.1 | histidinol dehydrogenase | - |
| I6K19_RS20180 (4181623) | 4181623..4182693 | + | 1071 | WP_204606438.1 | histidinol-phosphate transaminase | - |
| I6K19_RS20185 (4182693) | 4182693..4183760 | + | 1068 | WP_000080093.1 | bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 10183.58 Da Isoelectric Point: 8.0353
>T192026 WP_000767829.1 NZ_CP069882:c4178690-4178436 [Escherichia coli]
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY
Download Length: 255 bp
>T192026 NZ_CP092039:c2992046-2991732 [Pectobacterium brasiliense]
ATGCAATTCACTGTATACGGTAATACCGGGAAAAGCGTCGTTTACCCGCTGTTGCTCGATGTCACGAGCGATATCATTGG
GCAATTGAATCGTCGGATAATGATCCCATTGCTCCCAATTGAAAAGTATCCGGCAGGCCGCCGACCAGATCGTCTTGTCC
CCGTCGTCAGGCTGACGGACGGCAAAGAATACGCCGTAATGACCCACGAGCTGGCAAGTATCCCTGTCCAGGCCCTGGGT
GCGGTGTTTTGTGATGCTTCGCAGTACCGTTCTCAGGTAAAAGCTTCAATAGACTTCCTCATCGACGGGTTCTGA
ATGCAATTCACTGTATACGGTAATACCGGGAAAAGCGTCGTTTACCCGCTGTTGCTCGATGTCACGAGCGATATCATTGG
GCAATTGAATCGTCGGATAATGATCCCATTGCTCCCAATTGAAAAGTATCCGGCAGGCCGCCGACCAGATCGTCTTGTCC
CCGTCGTCAGGCTGACGGACGGCAAAGAATACGCCGTAATGACCCACGAGCTGGCAAGTATCCCTGTCCAGGCCCTGGGT
GCGGTGTTTTGTGATGCTTCGCAGTACCGTTCTCAGGTAAAAGCTTCAATAGACTTCCTCATCGACGGGTTCTGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9307.58 Da Isoelectric Point: 4.7954
>AT192026 WP_001259255.1 NZ_CP069882:c4178938-4178687 [Escherichia coli]
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE
Download Length: 252 bp
>AT192026 NZ_CP092039:c2992285-2992049 [Pectobacterium brasiliense]
ATGACCGCGAAACAACGCAACACGCAGAGCGTGACCATGACAGTAGAGCGTGCCTTACTGGTAAGAGCGCGTGAAGCGGG
CATCAATCTGAGTGCTACCCTGACAACCGCTCTGGATGCAGAGCTTCGCTCTCATGAAGCGAAAAAATGGCAGGAAGAAA
ACAGGGAGGCTCTCGCAGCACTCAATCGTTTTCATGATGAGCAGGGTTGTTTCAGCGATGAATACAGGACGTTTTAA
ATGACCGCGAAACAACGCAACACGCAGAGCGTGACCATGACAGTAGAGCGTGCCTTACTGGTAAGAGCGCGTGAAGCGGG
CATCAATCTGAGTGCTACCCTGACAACCGCTCTGGATGCAGAGCTTCGCTCTCATGAAGCGAAAAAATGGCAGGAAGAAA
ACAGGGAGGCTCTCGCAGCACTCAATCGTTTTCATGATGAGCAGGGTTGTTTCAGCGATGAATACAGGACGTTTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|