190745

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-YefM
Location 1742591..1743093 Replicon chromosome
Accession NZ_CP069517
Organism Escherichia coli strain FDAARGOS_1262

Toxin (Protein)


Gene name yoeB Uniprot ID D8A584
Locus tag I6J92_RS08470 Protein ID WP_000767828.1
Coordinates 1742591..1742845 (-) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID S1Q063
Locus tag I6J92_RS08475 Protein ID WP_001259255.1
Coordinates 1742842..1743093 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
I6J92_RS08440 1737606..1737833 - 228 WP_000985273.1 sulfurtransferase TusA family protein -
I6J92_RS08445 1737847..1738905 - 1059 WP_000492324.1 transport protein YeeE -
I6J92_RS08450 1739084..1740442 - 1359 WP_000019197.1 putrescine/proton symporter PlaP -
I6J92_RS08455 1740432..1740494 - 63 WP_010723108.1 membrane protein YoeI -
I6J92_RS08460 1740709..1741638 - 930 WP_000803351.1 LysR family transcriptional regulator -
I6J92_RS08465 1741684..1742508 - 825 WP_000754740.1 SDR family oxidoreductase -
I6J92_RS08470 1742591..1742845 - 255 WP_000767828.1 type II toxin-antitoxin system mRNA interferase toxin YoeB Toxin
I6J92_RS08475 1742842..1743093 - 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM Antitoxin
I6J92_RS08480 1743376..1743426 + 51 WP_001364200.1 his operon leader peptide -
I6J92_RS08485 1743572..1744471 + 900 WP_000131782.1 ATP phosphoribosyltransferase -
I6J92_RS08490 1744477..1745781 + 1305 WP_001370829.1 histidinol dehydrogenase -
I6J92_RS08495 1745778..1746848 + 1071 WP_000108949.1 histidinol-phosphate transaminase -
I6J92_RS08500 1746848..1747915 + 1068 WP_000080129.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10169.56 Da        Isoelectric Point: 8.0353

>T190745 WP_000767828.1 NZ_CP069517:c1742845-1742591 [Escherichia coli]
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEDHRLVYAVTDDSLLIAAC
RYHY

Download         Length: 255 bp

>T190745 NZ_CP091542:838568-838981 [Salmonella enterica subsp. enterica serovar Typhimurium]
GTGGTCCTGTGGCAATCTGATTTACGCGTCTCATGGCGCGCTCAGTGGATCTCATTGCTCATTCATGGGCTGGTTGCCGC
GGTGATTTTATTGATGCCCTGGCCGCTGAGTTATACCCCGTTATGGATGATACTACTGTCGCTGGTCGTGTTTGACTGTG
TACGTAGCCAGCGCAGGATTAATACCTGCCAGGGAGAGATCAAGCTACTCATGGACGGGCGCTTACGCTGGCAGGGGCAG
GACTGGACGCTCTTGCGTCCGCCCTGGTTACTGAAGAGCGGGATGGTGTTGCGTTTACGCGCAGAGTCTGGACGTCATCA
GCATTTATGGCTGGCGGCGGATAGCATGGAAGAAGCGGAATGGCGTGAGTTGCGTCGGATACTGTTACAGCAGCCGATAT
CAGGCCAACACTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9307.58 Da        Isoelectric Point: 4.7954

>AT190745 WP_001259255.1 NZ_CP069517:c1743093-1742842 [Escherichia coli]
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE

Download         Length: 252 bp

>AT190745 NZ_CP091542:838321-838587 [Salmonella enterica subsp. enterica serovar Typhimurium]
ATGGATATTCACAATAAAGCACGTATTCACTGGGCATGTCGTCGCGGTATGCGCGAACTTGATATTTCCATCATGCCGTT
TTTTGAACATGAGTACGATAGTTTAAGTGATGAAGAAAAGCGTATTTTTGTCCGTTTGTTGCAGAGTGATGACCCGGATT
TATTTAACTGGTTAATGAATCACGGTAAACCGGCTGACGCTGAACTGGAACAGATGGTCCGACTCATTCAGACACGGAAT
CGGGAACGTGGTCCTGTGGCAATCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829G465

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9LNR0

References