Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 875078..875895 Replicon chromosome
Accession NZ_CP069318
Organism Delftia lacustris strain R54

Toxin (Protein)


Gene name yhaV Uniprot ID -
Locus tag JQN63_RS03940 Protein ID WP_203400366.1
Coordinates 875078..875569 (-) Length 164 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID -
Locus tag JQN63_RS03945 Protein ID WP_016448384.1
Coordinates 875566..875895 (-) Length 110 a.a.

Genomic Context

JQN63_RS03910JQN63_RS03915JQN63_RS03920JQN63_RS03925JQN63_RS03930JQN63_RS03935JQN63_RS03965JQN63_RS03970JQN63_RS03940JQN63_RS03945JQN63_RS03950JQN63_RS03955JQN63_RS03960
Location: 870199..870683 (485 bp)
Type: Others
Protein ID: Protein_766
Location: 870680..871558 (879 bp)
Type: Others
Protein ID: WP_154833464.1
Location: 871555..872352 (798 bp)
Type: Others
Protein ID: WP_203400364.1
Location: 872416..872745 (330 bp)
Type: Others
Protein ID: WP_013800515.1
Location: 873021..874436 (1416 bp)
Type: Others
Protein ID: WP_203400365.1
Location: 874551..875063 (513 bp)
Type: Others
Protein ID: WP_016448386.1
Location: 879503..880309 (807 bp)
Type: Others
Protein ID: Protein_777
Location: 880402..880677 (276 bp)
Type: Others
Protein ID: WP_016448378.1
Location: 875078..875569 (492 bp)
Type: Toxin
Protein ID: WP_203400366.1
Location: 875566..875895 (330 bp)
Type: Antitoxin
Protein ID: WP_016448384.1
Location: 875992..878235 (2244 bp)
Type: Others
Protein ID: WP_203400367.1
Location: 878346..878741 (396 bp)
Type: Others
Protein ID: WP_203400368.1
Location: 878770..879432 (663 bp)
Type: Others
Protein ID: WP_016452692.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
JQN63_RS03910870199..870683+485Protein_766cobalamin biosynthesis protein-
JQN63_RS03915870680..871558+879WP_154833464.1precorrin-4 C(11)-methyltransferase-
JQN63_RS03920871555..872352+798WP_203400364.1precorrin-6A synthase (deacetylating)-
JQN63_RS03925872416..872745+330WP_013800515.1DHCW motif cupin fold protein-
JQN63_RS03930873021..874436+1416WP_203400365.1chloride channel protein-
JQN63_RS03935874551..875063+513WP_016448386.1MgtC/SapB family protein-
JQN63_RS03940875078..875569-492WP_203400366.1type II toxin-antitoxin system YhaV family toxinToxin
JQN63_RS03945875566..875895-330WP_016448384.1type II toxin-antitoxin system PrlF family antitoxinAntitoxin
JQN63_RS03950875992..878235-2244WP_203400367.1TonB-dependent receptor-
JQN63_RS03955878346..878741-396WP_203400368.1hypothetical protein-
JQN63_RS03960878770..879432-663WP_016452692.1pyridoxamine 5'-phosphate oxidase family protein-
JQN63_RS03965879503..880309+807Protein_777helix-turn-helix transcriptional regulator-
JQN63_RS03970880402..880677+276WP_016448378.1type II toxin-antitoxin system ParD family antitoxin-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin endonuclease, YhaV

(16-152)

Antitoxin

PrlF antitoxin

(8-107)


Sequences

Toxin        


Download         Length: 164 a.a.        Molecular weight: 18775.30 Da        Isoelectric Point: 9.9304

>T190131 WP_203400366.1 NZ_CP069318:c875569-875078 [Delftia lacustris]
MSAVPPAPLRIHGWTVFMHPLFLAQLQALSHEVEGLKTKDPGGYTRKNATKRLAAIRKLAFDVIPQDPTRPDYRQGHTLG
EEHKHWFRARFFQQYRLFFRFHAPSKIIVFAWVNDEDTRRAYEGSDDAYRVFRKMLANGHPAGDWDSLLAQAESPPPDSQ
PHA

Download         Length: 492 bp

>T190131 NZ_CP091120:c4166243-4165821 [Serratia marcescens]
GTGGCCCAGTGGCGATGTGATATCCGCATTTCCTGGCGCACCCAGCTTTTTTCCCTGTTGACTCATGGCGTTCTGATCTT
GCTGATCCTGATTTCGCCCTGGCCGGAAGGTTATGGCCCGCTTTGGCTGGTGCTGCTGACGCTGGTGGTGTTTCAGTGCA
TTCGTAGCCAGAAGCGCATCGCCGCAGTGCAGGGCGAGCTGCGGCTGCTGGCGGACCGGCGTTTCAGCTGGCACGGCCGA
GAATGGCGGCTGGCGAAAAAGCCCTGGATGCCGGGCTACGGCCTGCTGCTGACGCTGCAGCCGATGGAAGGCAAAAAGCG
CCGCCGGCTGTGGCTGGCTTCCGACTGCATGAGCAAAGAGGAGTGGCGCCACCTGCGGCAGCTGTTGCTGTATCCGCCGG
CGGGTAACGGCGAGGAACCCTGA

Antitoxin


Download         Length: 110 a.a.        Molecular weight: 12062.53 Da        Isoelectric Point: 4.1858

>AT190131 WP_016448384.1 NZ_CP069318:c875895-875566 [Delftia lacustris]
MFSTLEAESTLTDRYQTTIPEAVRRALHLSKRDRIHYTILPGGEVVLSRADSAEDADPVLGQFLGFLAQDMAAHPERLQT
MDARLAQQIQALTEGIEVDLDAPLLADDE

Download         Length: 330 bp

>AT190131 NZ_CP091120:c4166490-4166224 [Serratia marcescens]
ATGGATATTAACAACAAAGCACGTATTCACTGGGCTTGCCGTCGTGGCATGCGCGAGCTGGACATCTCCATCATGCCGTT
CTTCGAATACGAATACGACAGCCTGAATGACGCGGACAAGGCGCTGTTTATCCGCCTGCTGGAGTGTGACGATCCCGATC
TGTTCAACTGGCTGATGAATCATGGCGCGCCGCAGGACGGCGAGCTGCAGAGAATGGTGACCCTGATCCAAACGCGAAAT
AAAGACCGTGGCCCAGTGGCGATGTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References