Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yafN-yafO (relBE)/YafO-YafN
Location 248488..249182 Replicon chromosome
Accession NZ_CP069132
Organism Escherichia coli BW25113 substr. CHXR1G20

Toxin (Protein)


Gene name yafO Uniprot ID Q47157
Locus tag JQK35_RS01170 Protein ID WP_001263489.1
Coordinates 248784..249182 (+) Length 133 a.a.

Antitoxin (Protein)


Gene name yafN Uniprot ID S1QAE3
Locus tag JQK35_RS01165 Protein ID WP_000554758.1
Coordinates 248488..248781 (+) Length 98 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JQK35_RS01145 244120..244617 + 498 WP_000006255.1 REP-associated tyrosine transposase RayT -
JQK35_RS01150 244841..246553 - 1713 Protein_222 flagellar biosynthesis protein FlhA -
JQK35_RS01155 246525..247310 + 786 WP_000207552.1 putative lateral flagellar export/assembly protein LafU -
JQK35_RS01160 247381..248436 + 1056 WP_001226164.1 DNA polymerase IV -
JQK35_RS01165 248488..248781 + 294 WP_000554758.1 type I toxin-antitoxin system antitoxin YafN Antitoxin
JQK35_RS01170 248784..249182 + 399 WP_001263489.1 type II toxin-antitoxin system mRNA interferase toxin YafO Toxin
JQK35_RS01175 249192..249644 + 453 WP_001059892.1 GNAT family N-acetyltransferase -
JQK35_RS01180 249962..250168 + 207 Protein_228 RtcB family protein -
JQK35_RS01185 250164..250685 + 522 Protein_229 peptide chain release factor H -
JQK35_RS01190 250742..252199 - 1458 WP_001292994.1 cytosol nonspecific dipeptidase -
JQK35_RS01195 252460..252918 + 459 WP_001291990.1 xanthine phosphoribosyltransferase -
- 253514..253594 + 81 NuclAT_12 - -
- 253514..253594 + 81 NuclAT_12 - -
- 253514..253594 + 81 NuclAT_12 - -
- 253514..253594 + 81 NuclAT_12 - -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase toxin YafO

(27-130)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 133 a.a.        Molecular weight: 15487.84 Da        Isoelectric Point: 7.4215

>T189904 WP_001263489.1 NZ_CP069132:248784-249182 [Escherichia coli BW25113]
MRVFKTKLIRLQLTAEELDALTADFISYKRDGVLPDIFGRDALYDDSFTWPLIKFERVAHIHLANENNPFPPQLRQFSRT
NDEAHLVYCQGAFDEQAWLLIAILKPEPHKLARDNNQMHKIGKMAEAFRMRF

Download         Length: 399 bp

>T189904 NZ_CP091024:c4836701-4836390 [Escherichia coli]
ATGCTCTTCATCGAAACGGAAATTTTTACTGAAGATGTTCAAAAACTGCTGACCGACGATGAATTCAGTCGTTTTCAGTT
TTTCCTGGCCTTGAATCCTGACTATGGTGAGGTAATACCTGAAACTGGTGGGTTAAGAAAGGTTCGATGGGTTTCAGGAG
GAAAGGGGAAACGTGCTGGTGTCAGGGTTATTTACTTTCATCAGGTTAAACATTATGAGATCAGATTACTGCTTATTTAT
CGTAAGGGTATTAAAGATGATCTGTCTCCCCAGGAAAAAGCAATGCTCCGGTTGTTAAATACGAGGTGGTAA

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 11233.76 Da        Isoelectric Point: 5.2170

>AT189904 WP_000554758.1 NZ_CP069132:248488-248781 [Escherichia coli BW25113]
MHRILAEKSVNITELRKNPAKYFIDQPVAVLSNNRPAGYLLSASAFEALMDMLAEQEEKKPIKARFRPSAARLEEITRRA
EQYLNDMTDDDFNDFKE

Download         Length: 294 bp

>AT189904 NZ_CP091024:c4836389-4836099 [Escherichia coli]
ATGGATAAGGCACTTTTTGAGCGGTTGACTCACAGCATGGCCCAGATGAATGAAATTATTGAAGGAACGCGACAGCCTTC
GCGGACTTTTGAAGTTGATGCTATGAAAATCAAAGAAATACGCCGCGCTTCAGGGTTGTCACAATCTAAATTTGCCGATC
TTATTTCTGTAAGCGTAGACACGTTGCGTAACTGGGAGCAGGGGCGACGTTCACCGACCGGGCCTGCAAAGGCTTTGCTG
CGAGCGATTGCCAATGATCCGCAACATGTGCTGCAAGCACTTAACCGTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A090J8B1

Antitoxin

Source ID Structure
AlphaFold DB S1QAE3

References