Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/Gp49-HTH_37 |
| Location | 2216824..2217692 | Replicon | chromosome |
| Accession | NZ_CP069074 | ||
| Organism | Mycobacterium tuberculosis strain N1274 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | P9WJA4 |
| Locus tag | JN139_RS10360 | Protein ID | WP_010886136.1 |
| Coordinates | 2216824..2217201 (+) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | G0TLM0 |
| Locus tag | JN139_RS10365 | Protein ID | WP_003409886.1 |
| Coordinates | 2217243..2217692 (+) | Length | 150 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JN139_RS10310 | 2212613..2213065 | - | 453 | WP_003899095.1 | lipoprotein | - |
| JN139_RS10315 | 2213129..2213530 | + | 402 | WP_003409869.1 | hypothetical protein | - |
| JN139_RS10320 | 2213523..2213705 | - | 183 | WP_003409870.1 | hypothetical protein | - |
| JN139_RS10325 | 2213819..2214169 | - | 351 | WP_003409871.1 | hypothetical protein | - |
| JN139_RS10330 | 2214180..2215082 | - | 903 | WP_003899097.1 | hypothetical protein | - |
| JN139_RS10335 | 2215103..2215294 | - | 192 | WP_003409876.1 | hypothetical protein | - |
| JN139_RS10340 | 2215295..2215591 | - | 297 | WP_003409877.1 | hypothetical protein | - |
| JN139_RS10345 | 2215831..2216046 | + | 216 | WP_003409878.1 | antitoxin | - |
| JN139_RS10350 | 2216043..2216354 | + | 312 | WP_003409881.1 | type II toxin-antitoxin system VapC family toxin | - |
| JN139_RS10355 | 2216328..2216849 | - | 522 | WP_003904745.1 | hypothetical protein | - |
| JN139_RS10360 | 2216824..2217201 | + | 378 | WP_010886136.1 | type II toxin-antitoxin system toxin HigB | Toxin |
| JN139_RS10365 | 2217243..2217692 | + | 450 | WP_003409886.1 | type II toxin-antitoxin system antitoxin HigA | Antitoxin |
| JN139_RS10370 | 2217689..2218234 | + | 546 | WP_003409891.1 | SecB-like chaperone | - |
| JN139_RS10375 | 2218123..2218737 | - | 615 | WP_003901296.1 | hypothetical protein | - |
| JN139_RS10380 | 2218786..2219082 | - | 297 | WP_003409896.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JN139_RS10385 | 2219079..2219330 | - | 252 | WP_003409899.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| JN139_RS10390 | 2219317..2219811 | + | 495 | WP_003899099.1 | hypothetical protein | - |
| JN139_RS10395 | 2219971..2220378 | - | 408 | WP_003409913.1 | type II toxin-antitoxin system VapC family toxin | - |
| JN139_RS10400 | 2220382..2220654 | - | 273 | WP_003899100.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| JN139_RS10405 | 2220687..2221907 | - | 1221 | WP_003409919.1 | TetR family transcriptional regulator Mce3R | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 14397.77 Da Isoelectric Point: 10.8862
>T189613 WP_010886136.1 NZ_CP069074:2216824-2217201 [Mycobacterium tuberculosis]
VPPPDPAAMGTWKFFRASVDGRPVFKKEFDKLPDQARAALIVLMQRYLVGDLAAGSIKPIRGDILELRWHEANNHFRVLF
FRWGQHPVALTAFYKNQQKTPKTKIETALDRQKIWKRAFGDTPPI
VPPPDPAAMGTWKFFRASVDGRPVFKKEFDKLPDQARAALIVLMQRYLVGDLAAGSIKPIRGDILELRWHEANNHFRVLF
FRWGQHPVALTAFYKNQQKTPKTKIETALDRQKIWKRAFGDTPPI
Download Length: 378 bp
>T189613 NZ_CP090887:c1150292-1150038 [Streptococcus pneumoniae]
TTGTATAAATTAGTTCCAACAAGACGTTTCATCAAGCAATTGAAAAAATTGGACCGTTATACGCAGAAGCTAATTACAAA
CTATTTACAAATCAATGTTTTGGAAGACCCAAGACGACACGGAAAGGCTTTGGTTGGTAATCGCGTTGGTCAATGGCGCT
ATAGAATTGGTAATTATCGAGTTATCGTACAAATTGTAGATGATGAATTAGTTGTTGCTACTCTAGAAGTTGGTCATCGG
AGAGATATTTATTGA
TTGTATAAATTAGTTCCAACAAGACGTTTCATCAAGCAATTGAAAAAATTGGACCGTTATACGCAGAAGCTAATTACAAA
CTATTTACAAATCAATGTTTTGGAAGACCCAAGACGACACGGAAAGGCTTTGGTTGGTAATCGCGTTGGTCAATGGCGCT
ATAGAATTGGTAATTATCGAGTTATCGTACAAATTGTAGATGATGAATTAGTTGTTGCTACTCTAGAAGTTGGTCATCGG
AGAGATATTTATTGA
Antitoxin
Download Length: 150 a.a. Molecular weight: 16760.16 Da Isoelectric Point: 8.0771
>AT189613 WP_003409886.1 NZ_CP069074:2217243-2217692 [Mycobacterium tuberculosis]
MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLS
TLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARDHQVRVGADKEILMQTNWARHISVRQVEVA
MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLS
TLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARDHQVRVGADKEILMQTNWARHISVRQVEVA
Download Length: 450 bp
>AT189613 NZ_CP090887:c1150536-1150294 [Streptococcus pneumoniae]
ATGACTACTATTACATTAAAAGTTTCTGAAGCTGATAAAACATTTATGAAAGCAATGGCTAAGTTTGAAGGAGTTTCCCT
TTCGGAACTTATTCGCACCAAAACTCTTGAAGCCCTAGAAGATGAATACGATGCTCGTGTGGCAGATTTAGCCTATCAAG
AGTATTTAGAAGACTTGGAAAAAGGAGTTGAACCCATTACTTGGGAAGAAATGATGCATGATTTAGGCTTGAAGGATGAA
TAA
ATGACTACTATTACATTAAAAGTTTCTGAAGCTGATAAAACATTTATGAAAGCAATGGCTAAGTTTGAAGGAGTTTCCCT
TTCGGAACTTATTCGCACCAAAACTCTTGAAGCCCTAGAAGATGAATACGATGCTCGTGTGGCAGATTTAGCCTATCAAG
AGTATTTAGAAGACTTGGAAAAAGGAGTTGAACCCATTACTTGGGAAGAAATGATGCATGATTTAGGCTTGAAGGATGAA
TAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|