Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/HigB-HigA |
Location | 1244804..1245531 | Replicon | chromosome |
Accession | NZ_CP068819 | ||
Organism | Escherichia coli strain RIVM_C029042 |
Toxin (Protein)
Gene name | higB | Uniprot ID | V0YLE2 |
Locus tag | JNN65_RS06015 | Protein ID | WP_000547555.1 |
Coordinates | 1245220..1245531 (-) | Length | 104 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | - |
Locus tag | JNN65_RS06010 | Protein ID | WP_000126294.1 |
Coordinates | 1244804..1245223 (-) | Length | 140 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
JNN65_RS05990 | 1239889..1240416 | - | 528 | WP_001078777.1 | electron transport protein HydN | - |
JNN65_RS05995 | 1240565..1241575 | - | 1011 | WP_029130985.1 | DNA-binding transcriptional regulator AscG | - |
JNN65_RS06000 | 1241835..1243292 | + | 1458 | WP_001107889.1 | PTS cellobiose/arbutin/salicin transporter subunit IIBC | - |
JNN65_RS06005 | 1243301..1244725 | + | 1425 | WP_000110355.1 | 6-phospho-beta-glucosidase AscB | - |
JNN65_RS06010 | 1244804..1245223 | - | 420 | WP_000126294.1 | helix-turn-helix domain-containing protein | Antitoxin |
JNN65_RS06015 | 1245220..1245531 | - | 312 | WP_000547555.1 | type II toxin-antitoxin system HigB family toxin | Toxin |
JNN65_RS06020 | 1245698..1246168 | - | 471 | WP_001551542.1 | hydrogenase maturation peptidase HycI | - |
JNN65_RS06025 | 1246161..1246571 | - | 411 | WP_001291918.1 | formate hydrogenlyase assembly protein HycH | - |
JNN65_RS06030 | 1246568..1247335 | - | 768 | WP_000067399.1 | formate hydrogenlyase subunit HycG | - |
JNN65_RS06035 | 1247335..1247877 | - | 543 | WP_000493785.1 | formate hydrogenlyase subunit HycF | - |
JNN65_RS06040 | 1247887..1249596 | - | 1710 | WP_001288122.1 | formate hydrogenlyase subunit HycE | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 a.a. Molecular weight: 12439.18 Da Isoelectric Point: 9.5146
>T188422 WP_000547555.1 NZ_CP068819:c1245531-1245220 [Escherichia coli]
MHIISKAPFEECARKYPNDALALHSLYRVIKETDFSTPEEMRTAFPNLDNFKYRNKWYVLDVGGNNLRVIAYINFVNKRF
FVKHITNHAEYDKLTRYYRENKE
MHIISKAPFEECARKYPNDALALHSLYRVIKETDFSTPEEMRTAFPNLDNFKYRNKWYVLDVGGNNLRVIAYINFVNKRF
FVKHITNHAEYDKLTRYYRENKE
Download Length: 312 bp
>T188422 NZ_CP090448:2011172-2011275 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 140 a.a. Molecular weight: 15416.42 Da Isoelectric Point: 4.4596
>AT188422 WP_000126294.1 NZ_CP068819:c1245223-1244804 [Escherichia coli]
MTANAARAVKATRELVNAVPFLGGSDSEDDYREALELVEYLIEEDDTNPLIDFLASRIAEYENNNEKFAEFDKAVAAMPV
GVALLRTLIDQHNLTYADLKNEIGSKSLVSQILSGQRSLTISHIKALSARFGVKPEWFL
MTANAARAVKATRELVNAVPFLGGSDSEDDYREALELVEYLIEEDDTNPLIDFLASRIAEYENNNEKFAEFDKAVAAMPV
GVALLRTLIDQHNLTYADLKNEIGSKSLVSQILSGQRSLTISHIKALSARFGVKPEWFL
Download Length: 420 bp
>AT188422 NZ_CP090448:c2011313-2011042 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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