Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-YefM |
| Location | 969498..970000 | Replicon | chromosome |
| Accession | NZ_CP068807 | ||
| Organism | Escherichia coli strain RIVM_C018583 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | U9YDH0 |
| Locus tag | JNN51_RS04890 | Protein ID | WP_000767829.1 |
| Coordinates | 969498..969752 (-) | Length | 85 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | S1Q063 |
| Locus tag | JNN51_RS04895 | Protein ID | WP_001259255.1 |
| Coordinates | 969749..970000 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN51_RS04865 | 965280..966638 | - | 1359 | WP_000019197.1 | putrescine/proton symporter PlaP | - |
| JNN51_RS04870 | 966628..966690 | - | 63 | WP_010723108.1 | membrane protein YoeI | - |
| JNN51_RS04875 | 966897..967355 | - | 459 | WP_001550720.1 | IS200/IS605 family transposase | - |
| JNN51_RS04880 | 967616..968545 | - | 930 | WP_000803351.1 | LysR family transcriptional regulator | - |
| JNN51_RS04885 | 968591..969415 | - | 825 | WP_000754749.1 | SDR family oxidoreductase | - |
| JNN51_RS04890 | 969498..969752 | - | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | Toxin |
| JNN51_RS04895 | 969749..970000 | - | 252 | WP_001259255.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin |
| JNN51_RS04900 | 970283..970333 | + | 51 | WP_001364200.1 | his operon leader peptide | - |
| JNN51_RS04905 | 970479..971378 | + | 900 | WP_000131782.1 | ATP phosphoribosyltransferase | - |
| JNN51_RS04910 | 971384..972688 | + | 1305 | WP_001559366.1 | histidinol dehydrogenase | - |
| JNN51_RS04915 | 972685..973755 | + | 1071 | WP_000108970.1 | histidinol-phosphate transaminase | - |
| JNN51_RS04920 | 973755..974822 | + | 1068 | WP_001563933.1 | bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 966897..967355 | 458 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 10183.58 Da Isoelectric Point: 8.0353
>T188044 WP_000767829.1 NZ_CP068807:c969752-969498 [Escherichia coli]
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY
Download Length: 255 bp
>T188044 NZ_CP090208:c532804-532496 [Pantoea agglomerans]
ATGCACGTTATCTCAAGGGAGCCATTCAGGGAAGCAGCAGAGTTTCCAAACGACGCCACTGCATTGGATGCCATATATCT
GGTGTTAAAAGGCGAAAATTTTAGGTCGCCAGACGCATTAAAAAAGCGATTTCCCAGCCTGGACCGGATGAAATATCGGG
AGAAATGGTGGGTAATTGATGCAGGCGGTAATAACCTGAGGATAATGTTTTTCGTTGATTTTGAGCGAAGCAAAATTTTC
ATCAAGCATATCGTTACGCATCCGGAATACGACAGGCTTATAAAGAAGTATCGGGAGCAGAAAGAATGA
ATGCACGTTATCTCAAGGGAGCCATTCAGGGAAGCAGCAGAGTTTCCAAACGACGCCACTGCATTGGATGCCATATATCT
GGTGTTAAAAGGCGAAAATTTTAGGTCGCCAGACGCATTAAAAAAGCGATTTCCCAGCCTGGACCGGATGAAATATCGGG
AGAAATGGTGGGTAATTGATGCAGGCGGTAATAACCTGAGGATAATGTTTTTCGTTGATTTTGAGCGAAGCAAAATTTTC
ATCAAGCATATCGTTACGCATCCGGAATACGACAGGCTTATAAAGAAGTATCGGGAGCAGAAAGAATGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9307.58 Da Isoelectric Point: 4.7954
>AT188044 WP_001259255.1 NZ_CP068807:c970000-969749 [Escherichia coli]
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE
Download Length: 252 bp
>AT188044 NZ_CP090208:c532499-532080 [Pantoea agglomerans]
ATGATTACCGAAGCTATTCAGGCTACCAACCAACTGATTGAAATTATTCCTTTTTTAGGAGGGAGCACTCAGAAAAAGGA
TTATGAACAGGCACTGGAATTGGTGGAGTATCTGGTAGAGCATCAACCTGATAGCCCGCTAATTGATATGCTGGCTGATA
AAGTGGCCCGTTACGAAGATAATGCACCTGAATTCGCTGAGTTTAACGCCCGCATTGCAAAAATGCCGCAGGGCGTTGCG
TTACTGCGAGTACTGATGGATCAGTATGGCCTTAATCAATCCTCGTTTACTGAAGAAATTGGCCAGCGCTCTTACGTGAG
CCGTATTCTGCGTGGTCAACGATCCTTAACGGATAAACATAAAGCGCGTCTGGCAGCGCGGTTTAATCTGCCGTTCGAAG
CCTTTAATGGCAAGGCGTAG
ATGATTACCGAAGCTATTCAGGCTACCAACCAACTGATTGAAATTATTCCTTTTTTAGGAGGGAGCACTCAGAAAAAGGA
TTATGAACAGGCACTGGAATTGGTGGAGTATCTGGTAGAGCATCAACCTGATAGCCCGCTAATTGATATGCTGGCTGATA
AAGTGGCCCGTTACGAAGATAATGCACCTGAATTCGCTGAGTTTAACGCCCGCATTGCAAAAATGCCGCAGGGCGTTGCG
TTACTGCGAGTACTGATGGATCAGTATGGCCTTAATCAATCCTCGTTTACTGAAGAAATTGGCCAGCGCTCTTACGTGAG
CCGTATTCTGCGTGGTCAACGATCCTTAACGGATAAACATAAAGCGCGTCTGGCAGCGCGGTTTAATCTGCCGTTCGAAG
CCTTTAATGGCAAGGCGTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|