Detailed information of TA system TA187738

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): higBA (relBE)/HigB-HigA
• Location: 1233336..1234063
• Replicon: chromosome
• Accession: NZ_CP068796
• Organism: Escherichia coli strain RIVM_C012087

Toxin (Protein)

• Gene name: higB
• Uniprot ID: V0YLE2
• Locus tag: JNN38_RS05965
• Protein ID: WP_000547555.1
• Coordinates: 1233336..1233647 (+)
• Length: 104 a.a.

Antitoxin (Protein)

• Gene name: higA
• Uniprot ID: -
• Locus tag: JNN38_RS05970
• Protein ID: WP_000126294.1
• Coordinates: 1233644..1234063 (+)
• Length: 140 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
JNN38_RS05940	1229271..1230980	+	1710	WP_001288122.1	formate hydrogenlyase subunit HycE	-
JNN38_RS05945	1230990..1231532	+	543	WP_000493785.1	formate hydrogenlyase subunit HycF	-
JNN38_RS05950	1231532..1232299	+	768	WP_000067399.1	formate hydrogenlyase subunit HycG	-
JNN38_RS05955	1232296..1232706	+	411	WP_001291918.1	formate hydrogenlyase assembly protein HycH	-
JNN38_RS05960	1232699..1233169	+	471	WP_001551542.1	hydrogenase maturation peptidase HycI	-
JNN38_RS05965	1233336..1233647	+	312	WP_000547555.1	type II toxin-antitoxin system HigB family toxin	Toxin
JNN38_RS05970	1233644..1234063	+	420	WP_000126294.1	helix-turn-helix domain-containing protein	Antitoxin
JNN38_RS05975	1234142..1235566	-	1425	WP_000110355.1	6-phospho-beta-glucosidase AscB	-
JNN38_RS05980	1235575..1237032	-	1458	WP_001107889.1	PTS cellobiose/arbutin/salicin transporter subunit IIBC	-
JNN38_RS05985	1237292..1238302	+	1011	WP_029130985.1	DNA-binding transcriptional regulator AscG	-
JNN38_RS05990	1238451..1238978	+	528	WP_001078777.1	electron transport protein HydN	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, mRNA interferase HigB (22-93)

Antitoxin

• Cro/C1-type helix-turn-helix domain (85-138)

Sequences

Toxin

Protein

• Length: 104 a.a.
• Molecular weight: 12439.18 Da
• Isoelectric Point: 9.5146

>T187738 WP_000547555.1 NZ_CP068796:1233336-1233647 [Escherichia coli]
MHIISKAPFEECARKYPNDALALHSLYRVIKETDFSTPEEMRTAFPNLDNFKYRNKWYVLDVGGNNLRVIAYINFVNKRF
FVKHITNHAEYDKLTRYYRENKE

Nucleotide

• Length: 312 bp

>T187738 NZ_CP089985:c665816-665508 [Pseudomonas sp. HN11]
ATGATTCGATTCAAGAGATCCGACGAGTTTCAAGAGTGGCTTGATTCGTCACGCAGCAGGCCAGCCCGTGGTCGTGTGTT
GACAAGATTGGATAACGCAACGAGGGGTAACTTCGGAGACTGCGCACCCGTAGGAAATGGCGTATCAGAAATGCGCATCC
ACTATGGCCCTGGATACCGGGTTTACTTCACACGCGTTGACGAAGTGGTTTACCTGTTGTTGATAGGTGGCGATAAATCC
ACGCAAAAACGCGATATCCAGCGCGCTAAAGAAATGGCTGATGAATTTGGAATAAGGAGTGACTCATGA

Antitoxin

Protein

• Length: 140 a.a.
• Molecular weight: 15416.42 Da
• Isoelectric Point: 4.4596

>AT187738 WP_000126294.1 NZ_CP068796:1233644-1234063 [Escherichia coli]
MTANAARAVKATRELVNAVPFLGGSDSEDDYREALELVEYLIEEDDTNPLIDFLASRIAEYENNNEKFAEFDKAVAAMPV
GVALLRTLIDQHNLTYADLKNEIGSKSLVSQILSGQRSLTISHIKALSARFGVKPEWFL

Nucleotide

• Length: 420 bp

>AT187738 NZ_CP089985:c665511-665224 [Pseudomonas sp. HN11]
ATGACTCAATTTAAAGACTTCGACATCGCTGAGCACCTCAAGACTCCCGAGGACATGGCCGAGTACCTTGAAGCCTCTTT
CGAAGAGGACTCCGGCGACGGCTTGCTGATTCGTTCAGCCCTGAACAACATCGCCCGCGCCCAGGGCATGACCCAAATCG
CCCGCGACGCCGGTCTCGGACGCGAAAGCCTGTACAAAGCCCTCTCCGCCACTGGCAATCCCGAATTCGCGACTATCATG
AAAGTCATGAAAGCGTTGGGCCTCAAACTTCACGCCACCGCTATCTGA

Structures

Toxin

• AlphaFold DB: V0YLE2