Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) sprA1-sprA1AS/-
Location 2770206..2770356 Replicon chromosome
Accession NZ_CP068712
Organism Staphylococcus pseudoxylosus strain 14AME19

Toxin (Protein)


Gene name sprA1 Uniprot ID -
Locus tag JMB28_RS13175 Protein ID WP_107549122.1
Coordinates 2770261..2770356 (-) Length 32 a.a.

Antitoxin (RNA)


Gene name sprA1AS
Locus tag -
Coordinates 2770206..2770235 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JMB28_RS13150 2765327..2765770 - 444 WP_039069444.1 tripartite tricarboxylate transporter TctB family protein -
JMB28_RS13155 2765783..2766763 - 981 WP_069792613.1 tripartite tricarboxylate transporter substrate binding protein -
JMB28_RS13160 2767098..2768153 + 1056 WP_202847874.1 DUF418 domain-containing protein -
JMB28_RS13165 2768468..2769208 - 741 WP_039069452.1 SDR family oxidoreductase -
JMB28_RS13170 2769557..2770066 + 510 WP_039069453.1 hypothetical protein -
- 2770206..2770235 - 30 - - Antitoxin
JMB28_RS13175 2770261..2770356 - 96 WP_107549122.1 type I toxin-antitoxin system Fst family toxin Toxin
JMB28_RS13180 2770619..2771794 - 1176 WP_069792615.1 ABC transporter permease -
JMB28_RS13185 2771791..2772471 - 681 WP_069792616.1 ABC transporter ATP-binding protein -
JMB28_RS13190 2772468..2773583 - 1116 WP_069792617.1 RND transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.



Sequences

Toxin        


Download         Length: 32 a.a.        Molecular weight: 3618.37 Da        Isoelectric Point: 9.1070

>T187666 WP_107549122.1 NZ_CP068712:c2770356-2770261 [Staphylococcus pseudoxylosus]
MLMIFVHIIAPVISDCAVAYFTYWLSSKRNK

Download         Length: 96 bp

>T187666 NZ_CP089940:2499470-2499559 [Erwinia tracheiphila]
AAGCCTGCATTAATGCCAACTTTTAGCGCATGGCTCTGAACAGAGCCATTTCCCTGGACTGAAGACAGGAGTTGTCTTCA
GTCTTTTTTT

Antitoxin


Download         Length: 30 bp

>AT187666 NZ_CP068712:c2770235-2770206 [Staphylococcus pseudoxylosus]
AATCCCCTCACTATTTGCGGTAGTGAGGGG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Download structure file

References