Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/HigB-HigA |
| Location | 3947277..3948004 | Replicon | chromosome |
| Accession | NZ_CP068035 | ||
| Organism | Escherichia coli strain U90 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | J7Q991 |
| Locus tag | JKF55_RS19090 | Protein ID | WP_000547564.1 |
| Coordinates | 3947693..3948004 (-) | Length | 104 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | JKF55_RS19085 | Protein ID | WP_000126294.1 |
| Coordinates | 3947277..3947696 (-) | Length | 140 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JKF55_RS19065 | 3942327..3942854 | - | 528 | WP_001078777.1 | electron transport protein HydN | - |
| JKF55_RS19070 | 3943003..3944013 | - | 1011 | WP_063102913.1 | DNA-binding transcriptional regulator AscG | - |
| JKF55_RS19075 | 3944273..3945730 | + | 1458 | WP_001107856.1 | PTS cellobiose/arbutin/salicin transporter subunit IIBC | - |
| JKF55_RS19080 | 3945739..3947163 | + | 1425 | WP_063102937.1 | 6-phospho-beta-glucosidase AscB | - |
| JKF55_RS19085 | 3947277..3947696 | - | 420 | WP_000126294.1 | helix-turn-helix domain-containing protein | Antitoxin |
| JKF55_RS19090 | 3947693..3948004 | - | 312 | WP_000547564.1 | type II toxin-antitoxin system HigB family toxin | Toxin |
| JKF55_RS19095 | 3948178..3948939 | - | 762 | WP_001026446.1 | hypothetical protein | - |
| JKF55_RS19100 | 3948964..3949434 | - | 471 | WP_000132961.1 | hydrogenase maturation peptidase HycI | - |
| JKF55_RS19105 | 3949427..3949837 | - | 411 | WP_001291921.1 | formate hydrogenlyase assembly protein HycH | - |
| JKF55_RS19110 | 3949834..3950601 | - | 768 | WP_000067399.1 | formate hydrogenlyase subunit HycG | - |
| JKF55_RS19115 | 3950601..3951143 | - | 543 | WP_000493792.1 | formate hydrogenlyase subunit HycF | - |
| JKF55_RS19120 | 3951153..3952862 | - | 1710 | WP_001288134.1 | formate hydrogenlyase subunit HycE | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 a.a. Molecular weight: 12426.13 Da Isoelectric Point: 9.7248
>T186510 WP_000547564.1 NZ_CP068035:c3948004-3947693 [Escherichia coli]
MHIISKAPFEESARKYPNDALALQALYRVIKETDFSTPEEMRTAFPNLDNFRYRNKWYVLDVGGNNLRVIAYINFVNKRF
FVKHITNHAEYDKLTRYYRENKE
MHIISKAPFEESARKYPNDALALQALYRVIKETDFSTPEEMRTAFPNLDNFRYRNKWYVLDVGGNNLRVIAYINFVNKRF
FVKHITNHAEYDKLTRYYRENKE
Download Length: 312 bp
>T186510 NZ_CP089532:c208879-208304 [Pseudomonas veronii]
ATGAGGCATTCACCTTTCACAGCCTTCTACGACGCGAATGTTCTCTACCCTGCACCACTGCGTGACTACTTGATGCATCT
AGCCTTGACCGGCGTGTACCGCGCACGCTGGTCAGCTCTGATTCATGAAGAATGGAAGCGCAATCTACTGATCAACCGTC
CAGAGCTTACACGTGAGCAATTGGACCGAACGTCCTCGCTGATGGATAAAGCCGTTCCGGATGGTATTGTCACTGAATAC
GAGCCTCTTATAGAGGGACTGACTCTACCGGACGCTGACGACCGCCATGTGCTGGCAGCAGCTATCAAATGTAACGCCTC
GGTTATCGTGACTTTTAACCTTAAGGATTTCCCAAAGAGCGCTCTCGACGCGTTCGATATAGAGCCATTACACCCTGACG
ACTTTATTGCCGACCTATGGGATCTAGATCAAGCAGCTGTTTTGGAAGCAGCGCAAAGGCAGCGTGCATCCCTGAAAAAC
CCACCGCATAGCGCACGCGAGTATCTAGATAAGCTACTACAGCAGAAGCTACCCGAAACCGTAAAATTGCTGTCCGGTTT
TGAGTTCCTGATTTGA
ATGAGGCATTCACCTTTCACAGCCTTCTACGACGCGAATGTTCTCTACCCTGCACCACTGCGTGACTACTTGATGCATCT
AGCCTTGACCGGCGTGTACCGCGCACGCTGGTCAGCTCTGATTCATGAAGAATGGAAGCGCAATCTACTGATCAACCGTC
CAGAGCTTACACGTGAGCAATTGGACCGAACGTCCTCGCTGATGGATAAAGCCGTTCCGGATGGTATTGTCACTGAATAC
GAGCCTCTTATAGAGGGACTGACTCTACCGGACGCTGACGACCGCCATGTGCTGGCAGCAGCTATCAAATGTAACGCCTC
GGTTATCGTGACTTTTAACCTTAAGGATTTCCCAAAGAGCGCTCTCGACGCGTTCGATATAGAGCCATTACACCCTGACG
ACTTTATTGCCGACCTATGGGATCTAGATCAAGCAGCTGTTTTGGAAGCAGCGCAAAGGCAGCGTGCATCCCTGAAAAAC
CCACCGCATAGCGCACGCGAGTATCTAGATAAGCTACTACAGCAGAAGCTACCCGAAACCGTAAAATTGCTGTCCGGTTT
TGAGTTCCTGATTTGA
Antitoxin
Download Length: 140 a.a. Molecular weight: 15416.42 Da Isoelectric Point: 4.4596
>AT186510 WP_000126294.1 NZ_CP068035:c3947696-3947277 [Escherichia coli]
MTANAARAVKATRELVNAVPFLGGSDSEDDYREALELVEYLIEEDDTNPLIDFLASRIAEYENNNEKFAEFDKAVAAMPV
GVALLRTLIDQHNLTYADLKNEIGSKSLVSQILSGQRSLTISHIKALSARFGVKPEWFL
MTANAARAVKATRELVNAVPFLGGSDSEDDYREALELVEYLIEEDDTNPLIDFLASRIAEYENNNEKFAEFDKAVAAMPV
GVALLRTLIDQHNLTYADLKNEIGSKSLVSQILSGQRSLTISHIKALSARFGVKPEWFL
Download Length: 420 bp
>AT186510 NZ_CP089532:c209343-208876 [Pseudomonas veronii]
ATGACCACCGCCAACCTCGCTCGCACCATTCTTCCCGATGAGAAGGAAATCGCTGCGGCCGTGGCGTCAAGCCGTCAGTT
GGCCGCCTTCCTCACAACAAAATTTGAGACACAACGCATTGAGTTGGTTGACGAAACGCAACACCGCGAAGTCGTCGAAC
TTCCTACTTTCGCCCTCCGTTTACTCGGCGAAATTTTAAGCGAACTCGCGCTGGGTAACGCCGTCAAGGTCGTGCCGATT
CATGCGGAATTAACGACCCAAGAAGGGGCAGACATGCTCAATGTTTCGCGGCCTCACCTGGTGAAACTACTGGATAACGG
CGCATTGCCCCACACCAAAACCGGGAGACATCGTAGGATCAAGTTCGCTGATCTAATGACCTACAAGGAGCAGCGCGACC
TGGCAAGCCGTAATGCCATGGATGAGCTAGCTGCACAAGCCCAAGAATTAGGGATGGGGTATGAATGA
ATGACCACCGCCAACCTCGCTCGCACCATTCTTCCCGATGAGAAGGAAATCGCTGCGGCCGTGGCGTCAAGCCGTCAGTT
GGCCGCCTTCCTCACAACAAAATTTGAGACACAACGCATTGAGTTGGTTGACGAAACGCAACACCGCGAAGTCGTCGAAC
TTCCTACTTTCGCCCTCCGTTTACTCGGCGAAATTTTAAGCGAACTCGCGCTGGGTAACGCCGTCAAGGTCGTGCCGATT
CATGCGGAATTAACGACCCAAGAAGGGGCAGACATGCTCAATGTTTCGCGGCCTCACCTGGTGAAACTACTGGATAACGG
CGCATTGCCCCACACCAAAACCGGGAGACATCGTAGGATCAAGTTCGCTGATCTAATGACCTACAAGGAGCAGCGCGACC
TGGCAAGCCGTAATGCCATGGATGAGCTAGCTGCACAAGCCCAAGAATTAGGGATGGGGTATGAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|