Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) phd-doc/Doc-RelB
Location 332350..332936 Replicon chromosome
Accession NZ_CP068033
Organism Klebsiella pneumoniae strain LYS105A

Toxin (Protein)


Gene name doc Uniprot ID W8VD46
Locus tag JKA77_RS01545 Protein ID WP_002920800.1
Coordinates 332568..332936 (+) Length 123 a.a.

Antitoxin (Protein)


Gene name phd Uniprot ID W9B1V1
Locus tag JKA77_RS01540 Protein ID WP_004174006.1
Coordinates 332350..332571 (+) Length 74 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JKA77_RS01520 328507..329433 + 927 WP_002920807.1 high-affinity branched-chain amino acid ABC transporter permease LivH -
JKA77_RS01525 329430..330707 + 1278 WP_004174005.1 branched chain amino acid ABC transporter permease LivM -
JKA77_RS01530 330704..331471 + 768 WP_002920803.1 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG -
JKA77_RS01535 331473..332186 + 714 WP_004145133.1 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF -
JKA77_RS01540 332350..332571 + 222 WP_004174006.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
JKA77_RS01545 332568..332936 + 369 WP_002920800.1 type II toxin-antitoxin system death-on-curing family toxin Toxin
JKA77_RS01550 333209..334525 + 1317 WP_004174008.1 sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB -
JKA77_RS01555 334632..335519 + 888 WP_002920792.1 sn-glycerol-3-phosphate ABC transporter permease UgpA -
JKA77_RS01560 335516..336361 + 846 WP_004185988.1 sn-glycerol-3-phosphate ABC transporter permease UgpE -
JKA77_RS01565 336363..337433 + 1071 WP_004150074.1 sn-glycerol-3-phosphate import ATP-binding protein UgpC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - - 329430..338170 8740


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Fido domain

(13-86)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-50)


Sequences

Toxin        


Download         Length: 123 a.a.        Molecular weight: 13552.92 Da        Isoelectric Point: 8.6410

>T186470 WP_002920800.1 NZ_CP068033:332568-332936 [Klebsiella pneumoniae]
MTLQIISAEEIIQFHDRLLRVTPGVAGMPDPGRAEAIMYRVLNKIEYEGVTDVWRLAAMHLLAISRGHIFNDGNKRTALF
ITLLFLKRNGIILPANPDFVGMTVEAAAGQLTLEQIVARLRG

Download         Length: 369 bp

>T186470 NZ_CP089445:c4687633-4687526 [Escherichia coli]
ATGACGCTCGCAGAGCTGGGCATGGCCTTCTGGCATGATTTAGCGGCTCCGGTCATTGCTGGCATTCTTGCCAGTATGAT
CGTGAGCTGGCTGAACAAGCGGAAGTAA

Antitoxin


Download         Length: 74 a.a.        Molecular weight: 8151.15 Da        Isoelectric Point: 4.7769

>AT186470 WP_004174006.1 NZ_CP068033:332350-332571 [Klebsiella pneumoniae]
MRTVNYSEARQNLADVLESAVTGVPVTITRRGHKSAVIISAEEFERYQAARMDDEFAAIMAVHGDEIRELADK

Download         Length: 222 bp

>AT186470 NZ_CP089445:4687690-4687747 [Escherichia coli]
TCAAGATTAGCCCCCGTGATGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GUD1

Antitoxin

Source ID Structure
AlphaFold DB A0A5E5YJY7

References