Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | DinJ-YafQ (relBE)/YafQ-RelB |
| Location | 3701228..3701769 | Replicon | chromosome |
| Accession | NZ_CP067342 | ||
| Organism | Escherichia coli strain ECJXMCRH7 | ||
Toxin (Protein)
| Gene name | yafQ | Uniprot ID | A0A140NAP5 |
| Locus tag | JJB06_RS18205 | Protein ID | WP_000615981.1 |
| Coordinates | 3701491..3701769 (+) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | dinJ | Uniprot ID | S1EWQ0 |
| Locus tag | JJB06_RS18200 | Protein ID | WP_000729704.1 |
| Coordinates | 3701228..3701488 (+) | Length | 87 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJB06_RS18180 (3696911) | 3696911..3697696 | - | 786 | WP_000207564.1 | putative lateral flagellar export/assembly protein LafU | - |
| JJB06_RS18185 (3697668) | 3697668..3699380 | + | 1713 | Protein_3572 | flagellar biosynthesis protein FlhA | - |
| JJB06_RS18190 (3699596) | 3699596..3700093 | - | 498 | WP_000006260.1 | REP-associated tyrosine transposase RayT | - |
| JJB06_RS18195 (3700269) | 3700269..3701042 | - | 774 | WP_001353765.1 | C40 family peptidase | - |
| JJB06_RS18200 (3701228) | 3701228..3701488 | + | 261 | WP_000729704.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin |
| JJB06_RS18205 (3701491) | 3701491..3701769 | + | 279 | WP_000615981.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin |
| JJB06_RS18210 (3701925) | 3701925..3702665 | + | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| JJB06_RS18215 (3702636) | 3702636..3703403 | - | 768 | WP_000333379.1 | class II glutamine amidotransferase | - |
| JJB06_RS18220 (3703609) | 3703609..3704187 | - | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | fdeC / fdeC / ykgK/ecpR / yagZ/ecpA / yagY/ecpB / yagX/ecpC / yagW/ecpD / yagV/ecpE / gmhA/lpcA / tssA / hcp1/tssD1 | 3647873..3721534 | 73661 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10860.65 Da Isoelectric Point: 10.0702
>T186147 WP_000615981.1 NZ_CP067342:3701491-3701769 [Escherichia coli]
MIQRDIEYSGQFSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQSSWKGYRDAHVEPDWILIYKLTDKLLR
FERTGTHAALFG
MIQRDIEYSGQFSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQSSWKGYRDAHVEPDWILIYKLTDKLLR
FERTGTHAALFG
Download Length: 279 bp
>T186147 NZ_CP089227:c6927900-6927532 [Nocardia asteroides]
GTGACCTGGGAGATTGTCCTGCATCCGGAGGTGGAGTCATGGTTCTTGGCAATCTGCGGCACGGACCCCGAGACGGGTGA
CCTGATCGAGCGGGCAATCGATCACCTCGCATCGGAAGGACCGAGCCTGGGCCGACCGCTGGTCGACCGCATCAAAGGCA
GCCGATATCACAATATGAAGGAGTTACGGCCGGCCTCGACCGGCACGACCGAGGTCCGGATACTGTTCGCCTTCGACCCC
GCCCGTGCCGCTGCGATGCTGGTGGCCGGGGACAAATCCAATTTCTGGCAGGGTTGGTACAGCGAGGCGATACCGCTGGC
CGACAAACGCTTCACCGAGCACCTGGAAGCGTTGAAGGAGCAGTCATGA
GTGACCTGGGAGATTGTCCTGCATCCGGAGGTGGAGTCATGGTTCTTGGCAATCTGCGGCACGGACCCCGAGACGGGTGA
CCTGATCGAGCGGGCAATCGATCACCTCGCATCGGAAGGACCGAGCCTGGGCCGACCGCTGGTCGACCGCATCAAAGGCA
GCCGATATCACAATATGAAGGAGTTACGGCCGGCCTCGACCGGCACGACCGAGGTCCGGATACTGTTCGCCTTCGACCCC
GCCCGTGCCGCTGCGATGCTGGTGGCCGGGGACAAATCCAATTTCTGGCAGGGTTGGTACAGCGAGGCGATACCGCTGGC
CGACAAACGCTTCACCGAGCACCTGGAAGCGTTGAAGGAGCAGTCATGA
Antitoxin
Download Length: 87 a.a. Molecular weight: 9391.77 Da Isoelectric Point: 5.0758
>AT186147 WP_000729704.1 NZ_CP067342:3701228-3701488 [Escherichia coli]
MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQSIKNSEAGVDVHKAKDADDL
FDKLGI
MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQSIKNSEAGVDVHKAKDADDL
FDKLGI
Download Length: 261 bp
>AT186147 NZ_CP089227:c6927535-6927203 [Nocardia asteroides]
ATGAGCACCGAATTCAGCAAGTGGACCGACGTCAAAGCCAGGGCCCGGCAGCAGGATCCGAGGTCGGAAGCGGAGCAGAC
GGCAGGCGCGCTTCGCGCGGACGAGCGCCACGAGTCGTACCTGCGCGGACATCAGCTCGCGGAAATTCGCAAAGCCATGG
GAATGACCCAGGTGGCGCTCGCCGAAGCCCTCGGAGTCACACAGGCACGGGTGTCGAAGATCGAGCGAGGCGAGATCTCG
GGGATAGACGCGATTCGGGCGTATGTGACCGCACTCGGCGGATCGGTCGATGTGGTCGTGCGGCTTGGCGATCGGACCTG
GAACGTAGCCTGA
ATGAGCACCGAATTCAGCAAGTGGACCGACGTCAAAGCCAGGGCCCGGCAGCAGGATCCGAGGTCGGAAGCGGAGCAGAC
GGCAGGCGCGCTTCGCGCGGACGAGCGCCACGAGTCGTACCTGCGCGGACATCAGCTCGCGGAAATTCGCAAAGCCATGG
GAATGACCCAGGTGGCGCTCGCCGAAGCCCTCGGAGTCACACAGGCACGGGTGTCGAAGATCGAGCGAGGCGAGATCTCG
GGGATAGACGCGATTCGGGCGTATGTGACCGCACTCGGCGGATCGGTCGATGTGGTCGTGCGGCTTGGCGATCGGACCTG
GAACGTAGCCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|