Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | DinJ-YafQ (relBE)/YafQ-RelB |
Location | 1953725..1954266 | Replicon | chromosome |
Accession | NZ_CP067311 | ||
Organism | Escherichia coli strain 027_SK3 |
Toxin (Protein)
Gene name | yafQ | Uniprot ID | Q47149 |
Locus tag | JJB21_RS09675 | Protein ID | WP_000615983.1 |
Coordinates | 1953988..1954266 (+) | Length | 93 a.a. |
Antitoxin (Protein)
Gene name | dinJ | Uniprot ID | Q47150 |
Locus tag | JJB21_RS09670 | Protein ID | WP_000729703.1 |
Coordinates | 1953725..1953985 (+) | Length | 87 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
JJB21_RS09650 (1949400) | 1949400..1950185 | - | 786 | WP_000207587.1 | putative lateral flagellar export/assembly protein LafU | - |
JJB21_RS09655 (1950157) | 1950157..1951869 | + | 1713 | Protein_1916 | flagellar biosynthesis protein FlhA | - |
JJB21_RS09660 (1952093) | 1952093..1952590 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
JJB21_RS09665 (1952766) | 1952766..1953515 | - | 750 | WP_208771306.1 | C40 family peptidase | - |
JJB21_RS09670 (1953725) | 1953725..1953985 | + | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin |
JJB21_RS09675 (1953988) | 1953988..1954266 | + | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin |
JJB21_RS09680 (1954422) | 1954422..1955162 | + | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
JJB21_RS09685 (1955133) | 1955133..1955900 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
JJB21_RS09690 (1956106) | 1956106..1956684 | - | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Genomic island | - | - | 1910962..1954266 | 43304 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10846.62 Da Isoelectric Point: 9.9941
>T186112 WP_000615983.1 NZ_CP067311:1953988-1954266 [Escherichia coli]
MIQRDIEYSGQYSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLR
FERTGTHAALFG
MIQRDIEYSGQYSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLR
FERTGTHAALFG
Download Length: 279 bp
>T186112 NZ_CP089220:748939-749235 [Mycobacterium intracellulare]
GTGAAGCGGTATGTACTTTCGCCCGCCGCCCGCGCCGACCTGGAACAGATCTGGGATTACACCTGCCAGCGCTGGGATGA
CGATCAGGCCGAGGAATACGTCCGTGAAATCCAGCGCGCGATCGAACGAGTGGTCGACAATCCTATGATCGGACGGGCCT
GCGACGAACTCCGCCCTGGCTACCGGAAGCACGCTGTTGGATCGCACACGCTCTACTACCGGATTGTCACCGGCGACGTG
ATCAATGTGGTGCGCATACTCCACCAACGGATGGATGTCGACCGGCACCTCGACTGA
GTGAAGCGGTATGTACTTTCGCCCGCCGCCCGCGCCGACCTGGAACAGATCTGGGATTACACCTGCCAGCGCTGGGATGA
CGATCAGGCCGAGGAATACGTCCGTGAAATCCAGCGCGCGATCGAACGAGTGGTCGACAATCCTATGATCGGACGGGCCT
GCGACGAACTCCGCCCTGGCTACCGGAAGCACGCTGTTGGATCGCACACGCTCTACTACCGGATTGTCACCGGCGACGTG
ATCAATGTGGTGCGCATACTCCACCAACGGATGGATGTCGACCGGCACCTCGACTGA
Antitoxin
Download Length: 87 a.a. Molecular weight: 9405.80 Da Isoelectric Point: 5.0758
>AT186112 WP_000729703.1 NZ_CP067311:1953725-1953985 [Escherichia coli]
MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQSIKNSEAGIDVHKAKDADDL
FDKLGI
MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQSIKNSEAGIDVHKAKDADDL
FDKLGI
Download Length: 261 bp
>AT186112 NZ_CP089220:748691-748942 [Mycobacterium intracellulare]
GTGGGCAAGAATACGTCCTTCAGCCTCGACGAGCATTACAGCGCATTCATCGATGAGGAGGTGGCGTCGGGCCGTTACCG
CTCGGCCAGTGACGTCGTGCGTTCTGCTCTGCGGCTGCTTGAGGATCGTGAGACCCGCCTGCGCGCATTGCGCCAGGCAC
TCGACGCCGGCGAACGAAGTGGTGAGCCGACACCATTCGACTTCGATGAGTTCGTTGCGCGCAAGCGAGCTGAGCAACCT
CGCCGCCGGTGA
GTGGGCAAGAATACGTCCTTCAGCCTCGACGAGCATTACAGCGCATTCATCGATGAGGAGGTGGCGTCGGGCCGTTACCG
CTCGGCCAGTGACGTCGTGCGTTCTGCTCTGCGGCTGCTTGAGGATCGTGAGACCCGCCTGCGCGCATTGCGCCAGGCAC
TCGACGCCGGCGAACGAAGTGGTGAGCCGACACCATTCGACTTCGATGAGTTCGTTGCGCGCAAGCGAGCTGAGCAACCT
CGCCGCCGGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
PDB | 4Q2U |
Antitoxin
Source | ID | Structure |
---|---|---|
PDB | 4Q2U | |
AlphaFold DB | A0A5F1F716 |