Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/HTH(antitoxin) |
| Location | 5049405..5050007 | Replicon | chromosome |
| Accession | NZ_CP065136 | ||
| Organism | Escherichia coli strain EE72d | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | U9XIS6 |
| Locus tag | I2T83_RS24220 | Protein ID | WP_000897305.1 |
| Coordinates | 5049696..5050007 (-) | Length | 104 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | I2T83_RS24215 | Protein ID | WP_000356395.1 |
| Coordinates | 5049405..5049695 (-) | Length | 97 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I2T83_RS24180 | 5045150..5045785 | + | 636 | WP_000829013.1 | formate dehydrogenase cytochrome b556 subunit | - |
| I2T83_RS24185 | 5045782..5046711 | + | 930 | WP_000027708.1 | formate dehydrogenase accessory protein FdhE | - |
| I2T83_RS24190 | 5046893..5047135 | - | 243 | WP_021523315.1 | hypothetical protein | - |
| I2T83_RS24195 | 5047354..5047572 | - | 219 | WP_001295676.1 | ribbon-helix-helix domain-containing protein | - |
| I2T83_RS24200 | 5048024..5048721 | - | 698 | Protein_4732 | IS1 family transposase | - |
| I2T83_RS24205 | 5048750..5049046 | - | 297 | WP_203135151.1 | hypothetical protein | - |
| I2T83_RS24210 | 5049108..5049320 | - | 213 | WP_000197769.1 | hypothetical protein | - |
| I2T83_RS24215 | 5049405..5049695 | - | 291 | WP_000356395.1 | helix-turn-helix domain-containing protein | Antitoxin |
| I2T83_RS24220 | 5049696..5050007 | - | 312 | WP_000897305.1 | hypothetical protein | Toxin |
| I2T83_RS24225 | 5050236..5051144 | + | 909 | WP_001306651.1 | alpha/beta hydrolase | - |
| I2T83_RS24230 | 5051313..5053127 | - | 1815 | WP_020233236.1 | hypothetical protein | - |
| I2T83_RS24235 | 5053543..5054484 | - | 942 | WP_001297068.1 | fatty acid biosynthesis protein FabY | - |
| I2T83_RS24240 | 5054529..5054966 | - | 438 | WP_000560983.1 | D-tyrosyl-tRNA(Tyr) deacylase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 a.a. Molecular weight: 12190.19 Da Isoelectric Point: 9.7791
>T182100 WP_000897305.1 NZ_CP065136:c5050007-5049696 [Escherichia coli]
MLFIETEIFTEDVQKLLTDDEFSRFQFFLALNPDYGEVIPETGGLRKVRWVSGGKGKRAGVRVIYFHQVKHYEIRLLLIY
RKGIKDDLSPQEKAMLRLLNTRW
MLFIETEIFTEDVQKLLTDDEFSRFQFFLALNPDYGEVIPETGGLRKVRWVSGGKGKRAGVRVIYFHQVKHYEIRLLLIY
RKGIKDDLSPQEKAMLRLLNTRW
Download Length: 312 bp
>T182100 NZ_CP086305:2506937-2507518 [Burkholderia ambifaria]
ATGAACCTCGACACGATCCACGCGCGGCTCGATTTCCTGCGCGAAGCCGAACGCCTGAAAGACGTGCTGCGCAGCGGCCA
CACGTCGACGGGCCGCTCCGAAAGCACGGCGGAGCACAGCTGGCGTCTCTGCCTGATGGCGCTCGTGTTCGCCGATGCGC
TGCCCGACGTCGACACGACGAAACTGCTGAAACTGTGCGTCGTCCACGATCTCGGCGAAGCGCTGCACGGCGACATCCCC
GCGATCGAGCAGGCCGCGCATCCGGACAAGAGCACGCACGAACGCGACGACCTGCTGACGCTGACGGCCGGGCTCGATCG
CGCGCTGCGCAACGAGATCGTCGCGCTGTGGGATGAATACGAGGCGGCCGAATCGCCGGAAGCGCGCGCCGCGAAGGCGC
TCGACAAGCTGGAGACGATCCTGCAGCACAACCAGGGCAGCAATCCGCCCGACTTCGACTACGCGTTCAATCTCGGCTAC
GGGCGGCGCTACACCGACGCGACGCCGCTGTTCGGCGCGATCCGCGCGATCGTCGACGCGGACACGCAACGCCGGATCGA
CGCACGCGGCGACGGCACGTAA
ATGAACCTCGACACGATCCACGCGCGGCTCGATTTCCTGCGCGAAGCCGAACGCCTGAAAGACGTGCTGCGCAGCGGCCA
CACGTCGACGGGCCGCTCCGAAAGCACGGCGGAGCACAGCTGGCGTCTCTGCCTGATGGCGCTCGTGTTCGCCGATGCGC
TGCCCGACGTCGACACGACGAAACTGCTGAAACTGTGCGTCGTCCACGATCTCGGCGAAGCGCTGCACGGCGACATCCCC
GCGATCGAGCAGGCCGCGCATCCGGACAAGAGCACGCACGAACGCGACGACCTGCTGACGCTGACGGCCGGGCTCGATCG
CGCGCTGCGCAACGAGATCGTCGCGCTGTGGGATGAATACGAGGCGGCCGAATCGCCGGAAGCGCGCGCCGCGAAGGCGC
TCGACAAGCTGGAGACGATCCTGCAGCACAACCAGGGCAGCAATCCGCCCGACTTCGACTACGCGTTCAATCTCGGCTAC
GGGCGGCGCTACACCGACGCGACGCCGCTGTTCGGCGCGATCCGCGCGATCGTCGACGCGGACACGCAACGCCGGATCGA
CGCACGCGGCGACGGCACGTAA
Antitoxin
Download Length: 97 a.a. Molecular weight: 10869.46 Da Isoelectric Point: 10.8907
>AT182100 WP_000356395.1 NZ_CP065136:c5049695-5049405 [Escherichia coli]
MDKALFERLTHSMAQMNEIIEGTRHPSRTFEVDAMKIKEIRRASGLSQSKFAELISVSVDTLRNWEQGRRSPTGPAKALL
RAIANDPQHVLQALNR
MDKALFERLTHSMAQMNEIIEGTRHPSRTFEVDAMKIKEIRRASGLSQSKFAELISVSVDTLRNWEQGRRSPTGPAKALL
RAIANDPQHVLQALNR
Download Length: 291 bp
>AT182100 NZ_CP086305:2506270-2506827 [Burkholderia ambifaria]
ATGACGACCTCGCCGCTTCACACCCCGCCGCTCGGCCCGCAACTCAAGCGCTGGCGCGCGCTGCGCCGCGTGAAGCAGAG
CCATGCGGCCGAGCTGTTCGGCGTCGCGCAATCGACGATCTCGCGCTGGGAAGCCGGCATCCAGCAGATGTCGCCCGACG
AGCGCGCGACGGCCGAGCGGCTGCTTGCCGCGCGTCTCGATTCGGCCGGCGACCACGCGCTCGCGCGGCTGATCGCGAAC
AGCACGGCCCACATGCATCTCGTGTGCGACCTCACGCACCGTCTGCTCGCCTGTTCGCCATCGCGCGCCGCCGAGTTCTC
TCGGCCGCTGCCGATGTTGCTCGGTACCTCGCTGTGGCGCTATGCGTCGCCGGAAATCGTCCGCATGGAAGCCGCGCTCG
ACCCGCTCGGCTGGCACGATCGCGCGGGACCGCCGAGCGTCGAATTCACGACCGGCACCAATGCGTCGCGCGTCGTGCCG
ATCCGTGGCAGCACCTGCCGGTGGACGCGCATGACGCTGTCGGACGGCTCCGCCGCGCGGCTCGTCGAAACGCTGTAG
ATGACGACCTCGCCGCTTCACACCCCGCCGCTCGGCCCGCAACTCAAGCGCTGGCGCGCGCTGCGCCGCGTGAAGCAGAG
CCATGCGGCCGAGCTGTTCGGCGTCGCGCAATCGACGATCTCGCGCTGGGAAGCCGGCATCCAGCAGATGTCGCCCGACG
AGCGCGCGACGGCCGAGCGGCTGCTTGCCGCGCGTCTCGATTCGGCCGGCGACCACGCGCTCGCGCGGCTGATCGCGAAC
AGCACGGCCCACATGCATCTCGTGTGCGACCTCACGCACCGTCTGCTCGCCTGTTCGCCATCGCGCGCCGCCGAGTTCTC
TCGGCCGCTGCCGATGTTGCTCGGTACCTCGCTGTGGCGCTATGCGTCGCCGGAAATCGTCCGCATGGAAGCCGCGCTCG
ACCCGCTCGGCTGGCACGATCGCGCGGGACCGCCGAGCGTCGAATTCACGACCGGCACCAATGCGTCGCGCGTCGTGCCG
ATCCGTGGCAGCACCTGCCGGTGGACGCGCATGACGCTGTCGGACGGCTCCGCCGCGCGGCTCGTCGAAACGCTGTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|