Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-YefM |
| Location | 7765470..7766011 | Replicon | chromosome |
| Accession | NZ_CP064703 | ||
| Organism | Bradyrhizobium sp. 170 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | - |
| Locus tag | IVB05_RS36240 | Protein ID | WP_247780867.1 |
| Coordinates | 7765745..7766011 (+) | Length | 89 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | - |
| Locus tag | IVB05_RS36235 | Protein ID | WP_247780866.1 |
| Coordinates | 7765470..7765748 (+) | Length | 93 a.a. |
Genomic Context
Location: 7763100..7763753 (654 bp)
Type: Others
Protein ID: WP_247787261.1
Type: Others
Protein ID: WP_247787261.1
Location: 7763960..7764133 (174 bp)
Type: Others
Protein ID: WP_247780862.1
Type: Others
Protein ID: WP_247780862.1
Location: 7764203..7765363 (1161 bp)
Type: Others
Protein ID: WP_247780864.1
Type: Others
Protein ID: WP_247780864.1
Location: 7765470..7765748 (279 bp)
Type: Antitoxin
Protein ID: WP_247780866.1
Type: Antitoxin
Protein ID: WP_247780866.1
Location: 7765745..7766011 (267 bp)
Type: Toxin
Protein ID: WP_247780867.1
Type: Toxin
Protein ID: WP_247780867.1
Location: 7766666..7767478 (813 bp)
Type: Others
Protein ID: WP_247780871.1
Type: Others
Protein ID: WP_247780871.1
Location: 7767772..7768233 (462 bp)
Type: Others
Protein ID: WP_247780873.1
Type: Others
Protein ID: WP_247780873.1
Location: 7768520..7769458 (939 bp)
Type: Others
Protein ID: WP_247780874.1
Type: Others
Protein ID: WP_247780874.1
Location: 7760476..7760994 (519 bp)
Type: Others
Protein ID: WP_247780859.1
Type: Others
Protein ID: WP_247780859.1
Location: 7761216..7762418 (1203 bp)
Type: Others
Protein ID: WP_247780861.1
Type: Others
Protein ID: WP_247780861.1
Location: 7766111..7766464 (354 bp)
Type: Others
Protein ID: WP_247780869.1
Type: Others
Protein ID: WP_247780869.1
Location: 7769634..7770878 (1245 bp)
Type: Others
Protein ID: WP_247780876.1
Type: Others
Protein ID: WP_247780876.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IVB05_RS36210 (IVB05_36065) | 7760476..7760994 | - | 519 | WP_247780859.1 | DUF992 domain-containing protein | - |
| IVB05_RS36215 (IVB05_36070) | 7761216..7762418 | - | 1203 | WP_247780861.1 | pyridoxal phosphate-dependent aminotransferase | - |
| IVB05_RS36220 (IVB05_36075) | 7763100..7763753 | + | 654 | WP_247787261.1 | glutathione S-transferase family protein | - |
| IVB05_RS36225 (IVB05_36080) | 7763960..7764133 | + | 174 | WP_247780862.1 | hypothetical protein | - |
| IVB05_RS36230 (IVB05_36085) | 7764203..7765363 | + | 1161 | WP_247780864.1 | PQQ-dependent sugar dehydrogenase | - |
| IVB05_RS36235 (IVB05_36090) | 7765470..7765748 | + | 279 | WP_247780866.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
| IVB05_RS36240 (IVB05_36095) | 7765745..7766011 | + | 267 | WP_247780867.1 | Txe/YoeB family addiction module toxin | Toxin |
| IVB05_RS36245 (IVB05_36100) | 7766111..7766464 | - | 354 | WP_247780869.1 | DMT family protein | - |
| IVB05_RS36250 (IVB05_36105) | 7766666..7767478 | + | 813 | WP_247780871.1 | PAS-domain containing protein | - |
| IVB05_RS36255 (IVB05_36110) | 7767772..7768233 | + | 462 | WP_247780873.1 | GNAT family N-acetyltransferase | - |
| IVB05_RS36260 (IVB05_36115) | 7768520..7769458 | + | 939 | WP_247780874.1 | aldo/keto reductase | - |
| IVB05_RS36265 (IVB05_36120) | 7769634..7770878 | - | 1245 | WP_247780876.1 | DUF1501 domain-containing protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10497.95 Da Isoelectric Point: 8.8883
>T181653 WP_247780867.1 NZ_CP064703:7765745-7766011 [Bradyrhizobium sp. 170]
MKTAWTEDAWQDYLQWQKEDEKILEVINGLIKDIKRDPFKGLGKPEPLKHALQGWWSRRISGEHRLVYRVSGKGDTQQLD
IAQCRYHY
MKTAWTEDAWQDYLQWQKEDEKILEVINGLIKDIKRDPFKGLGKPEPLKHALQGWWSRRISGEHRLVYRVSGKGDTQQLD
IAQCRYHY
Download Length: 267 bp
>T181653 NZ_CP086016:1314980-1315270 [Pseudomonas aeruginosa]
ATGACCGAGCAAATTTATGATTATGACCCCGCGCAAGCGCTGGACAGCCCGGAGGCCATGGCTCTGTTCATCGCAGACGC
CTTGGATACTGGAGACACCGCCTATATCGCTAAGGCTATGGGAGTCGTGGCTCGCGCCAAGGGGATGACGGAGTTGGCCA
AGGAAACGGGTTTGGCCAGGGAGCAGCTTTACAAATCGTTTAGTGAGCGCGGGAACCCGACATTGAAAACCATGCTGGCA
GTAATGCGAGCTTTGGGCGTTGATCTGACCGCCCGCCCGCATGCTCAGTGA
ATGACCGAGCAAATTTATGATTATGACCCCGCGCAAGCGCTGGACAGCCCGGAGGCCATGGCTCTGTTCATCGCAGACGC
CTTGGATACTGGAGACACCGCCTATATCGCTAAGGCTATGGGAGTCGTGGCTCGCGCCAAGGGGATGACGGAGTTGGCCA
AGGAAACGGGTTTGGCCAGGGAGCAGCTTTACAAATCGTTTAGTGAGCGCGGGAACCCGACATTGAAAACCATGCTGGCA
GTAATGCGAGCTTTGGGCGTTGATCTGACCGCCCGCCCGCATGCTCAGTGA
Antitoxin
Download Length: 93 a.a. Molecular weight: 10380.83 Da Isoelectric Point: 4.8893
>AT181653 WP_247780866.1 NZ_CP064703:7765470-7765748 [Bradyrhizobium sp. 170]
MAHVSYTELRNNLASYMDEVCDDRAPLFVTRQNARTVVLMAEDEYESLMETVHLLKSPANAVRLLRSIKEADEGKLTERE
LIEPTKAGSAKV
MAHVSYTELRNNLASYMDEVCDDRAPLFVTRQNARTVVLMAEDEYESLMETVHLLKSPANAVRLLRSIKEADEGKLTERE
LIEPTKAGSAKV
Download Length: 279 bp
>AT181653 NZ_CP086016:1314684-1314983 [Pseudomonas aeruginosa]
ATGGTTGAAGTCAAACAAACCGCCACTTTCATGGCATGGGAAAGCAAGCTAAAGGATCGGCGGGCAAAGGCCGTGATCGC
CGCCCGTATCTTCCGATTGGCGAATGGACTACCCGGCGATGTGTCACCAGTCGGCCAGGGTGTGAGCGAGTTGAGGATTC
ACTATGGCCCAGGCTATCGGGTGTACTTCCAGCAGCGCGGGACGGAAATCGTCATCCTGCTATGTGGTGGAGACAAGAGC
AGCCAGGCCAGGGATATAGAAATGGCGAAACGCCTGGCAAATGAGTGGAGGCCGCAATGA
ATGGTTGAAGTCAAACAAACCGCCACTTTCATGGCATGGGAAAGCAAGCTAAAGGATCGGCGGGCAAAGGCCGTGATCGC
CGCCCGTATCTTCCGATTGGCGAATGGACTACCCGGCGATGTGTCACCAGTCGGCCAGGGTGTGAGCGAGTTGAGGATTC
ACTATGGCCCAGGCTATCGGGTGTACTTCCAGCAGCGCGGGACGGAAATCGTCATCCTGCTATGTGGTGGAGACAAGAGC
AGCCAGGCCAGGGATATAGAAATGGCGAAACGCCTGGCAAATGAGTGGAGGCCGCAATGA