Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/COG4683-HTH_37
Location 1252234..1252880 Replicon chromosome
Accession NZ_CP063934
Organism Klebsiella pneumoniae strain BS326-3

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag ISA64_RS05885 Protein ID WP_194429468.1
Coordinates 1252234..1252581 (+) Length 116 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag ISA64_RS05890 Protein ID WP_194429469.1
Coordinates 1252581..1252880 (+) Length 100 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ISA64_RS05875 1248160..1249593 + 1434 WP_002920564.1 glycogen synthase GlgA -
ISA64_RS05880 1249611..1252058 + 2448 WP_002920561.1 glycogen phosphorylase -
ISA64_RS05885 1252234..1252581 + 348 WP_194429468.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
ISA64_RS05890 1252581..1252880 + 300 WP_194429469.1 helix-turn-helix transcriptional regulator Antitoxin
ISA64_RS05895 1252943..1254451 - 1509 WP_002920554.1 glycerol-3-phosphate dehydrogenase -
ISA64_RS05900 1254656..1254985 + 330 WP_002920552.1 thiosulfate sulfurtransferase GlpE -
ISA64_RS05905 1255036..1255866 + 831 WP_004151408.1 rhomboid family intramembrane serine protease GlpG -
ISA64_RS05910 1255916..1256674 + 759 WP_002920548.1 DeoR/GlpR family transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(17-107)

Antitoxin

Cro/C1-type helix-turn-helix domain

(31-84)


Sequences

Toxin        


Download         Length: 116 a.a.        Molecular weight: 13419.41 Da        Isoelectric Point: 6.2327

>T179701 WP_194429468.1 NZ_CP063934:1252234-1252581 [Klebsiella pneumoniae]
MWDVETTDTFDTGFELQSRALKEDMLATMLILSEFAPQLGRPYVDTVKDSTFQNMKELRVQHHGLPIRAFFAFDPLRKAI
VLCAGNKDGMNEKRFYKEMITLADREFSQHLTKER

Download         Length: 348 bp

>T179701 NZ_CP084874:808013-808423 [Klebsiella africana]
GTGGTCCTGTGGCAATCTGATCTGCGTATCTCCTGGCGCGCGCAGTGGTTTTCCCTGCTGCTCCACGGCGTGGTGGCCGC
GCTGGTGCTGTTGGTTCCCTGGCCGCTGAGCTACACTCCGATCTGGCTGCTGCTGTTGTCGCTGGTGGTGTTTGACTGCG
TGCGCAGCCAGCGGCGGATCCATGCTCGTCGCGGGGAGATAAAACTGCTCACCGACTCCCGTCTTCGCTGGCAAAACGCC
GAATGGGAGATCCTTGGGACCCCGTGGGTCATCAATAGCGGTATGCTGCTGCGTTTGCGCCATGTCGATACCCGGCGCGG
ACAGCATCTTTGGCTGGCGGCGGACAGCATGGACGCCGGAGAGTGGCGCGATCTGCGCCGGCTGGTGCTGCAAAAACCGG
CGCAGGAGTAG

Antitoxin


Download         Length: 100 a.a.        Molecular weight: 10813.63 Da        Isoelectric Point: 10.6143

>AT179701 WP_194429469.1 NZ_CP063934:1252581-1252880 [Klebsiella pneumoniae]
MATLKELMAKQSPESQQRIAAKAAERRQSVALNLLREELQMSQTEMAAAMGVKQPTIAKMEQADNAPRLSTLKRYIAALG
GELSINVTLPTGKKVSFNL

Download         Length: 300 bp

>AT179701 NZ_CP084874:807766-808032 [Klebsiella africana]
ATGGACATTAACAATAAAGCACGTATCCACTGGGCATGCCGCCGCGGGATGCGCGAACTCGACATCTCCATCATGCCGTT
CTTTGAGTATGAGTACGATACCCTCAGCGATGCTGACAAACAGCTGTTCATTCGCCTGCTGGAAAATGACGATCCGGATC
TATTCAACTGGCTGATGAACCACGGCAAACCGGCCGATGCGGAGCTACAGCGGATGGTAACCTTAATTCAAACACGGAAT
CGGGAACGTGGTCCTGTGGCAATCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References