Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | phd-doc/Doc-RelB |
Location | 4379053..4379639 | Replicon | chromosome |
Accession | NZ_CP063904 | ||
Organism | Klebsiella pneumoniae strain BM334-2 |
Toxin (Protein)
Gene name | doc | Uniprot ID | W8VD46 |
Locus tag | ISA84_RS21170 | Protein ID | WP_002920800.1 |
Coordinates | 4379271..4379639 (+) | Length | 123 a.a. |
Antitoxin (Protein)
Gene name | phd | Uniprot ID | W9B1V1 |
Locus tag | ISA84_RS21165 | Protein ID | WP_004174006.1 |
Coordinates | 4379053..4379274 (+) | Length | 74 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
ISA84_RS21145 | 4375210..4376136 | + | 927 | WP_002920807.1 | high-affinity branched-chain amino acid ABC transporter permease LivH | - |
ISA84_RS21150 | 4376133..4377410 | + | 1278 | WP_004174005.1 | branched chain amino acid ABC transporter permease LivM | - |
ISA84_RS21155 | 4377407..4378174 | + | 768 | WP_002920803.1 | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG | - |
ISA84_RS21160 | 4378176..4378889 | + | 714 | WP_004145133.1 | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | - |
ISA84_RS21165 | 4379053..4379274 | + | 222 | WP_004174006.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
ISA84_RS21170 | 4379271..4379639 | + | 369 | WP_002920800.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin |
ISA84_RS21175 | 4379912..4381228 | + | 1317 | WP_002920796.1 | sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB | - |
ISA84_RS21180 | 4381335..4382222 | + | 888 | WP_002920792.1 | sn-glycerol-3-phosphate ABC transporter permease UgpA | - |
ISA84_RS21185 | 4382219..4383064 | + | 846 | WP_004174009.1 | sn-glycerol-3-phosphate ABC transporter permease UgpE | - |
ISA84_RS21190 | 4383066..4384136 | + | 1071 | WP_004213396.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
inside | Prophage | - | - | 4376133..4384873 | 8740 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 123 a.a. Molecular weight: 13552.92 Da Isoelectric Point: 8.6410
>T179333 WP_002920800.1 NZ_CP063904:4379271-4379639 [Klebsiella pneumoniae]
MTLQIISAEEIIQFHDRLLRVTPGVAGMPDPGRAEAIMYRVLNKIEYEGVTDVWRLAAMHLLAISRGHIFNDGNKRTALF
ITLLFLKRNGIILPANPDFVGMTVEAAAGQLTLEQIVARLRG
MTLQIISAEEIIQFHDRLLRVTPGVAGMPDPGRAEAIMYRVLNKIEYEGVTDVWRLAAMHLLAISRGHIFNDGNKRTALF
ITLLFLKRNGIILPANPDFVGMTVEAAAGQLTLEQIVARLRG
Download Length: 369 bp
>T179333 NZ_CP084703:496374-496724 [Bacillus shivajii]
TTGATTGTAAAACGTGGTGATGTTTATTTTGCTGACCTTTCACCCGTTGTTGGTTCTGAACAAGGTGGAATCCGACCGGT
TCTTATTATTCAAAACGATATCGGGAACCGCTTTAGCCCGACGGTTATTGTGGCAGCAATTACAGCGCAAATTCAAAAAG
CGAAATTGCCAACACATGTGGAAATTAATGCGAAAAGATATGGATTTGATCGAGATTCCGTCATACTTCTAGAACAAGTC
CGCACCATTGATAAGCAACGTCTAACGGATAAGATCACGCATCTGGATGATGATATGATGGCAAAAGTTAATGATGCTTT
GATGATCAGTCTTGGTTTGATTGACTTTTAA
TTGATTGTAAAACGTGGTGATGTTTATTTTGCTGACCTTTCACCCGTTGTTGGTTCTGAACAAGGTGGAATCCGACCGGT
TCTTATTATTCAAAACGATATCGGGAACCGCTTTAGCCCGACGGTTATTGTGGCAGCAATTACAGCGCAAATTCAAAAAG
CGAAATTGCCAACACATGTGGAAATTAATGCGAAAAGATATGGATTTGATCGAGATTCCGTCATACTTCTAGAACAAGTC
CGCACCATTGATAAGCAACGTCTAACGGATAAGATCACGCATCTGGATGATGATATGATGGCAAAAGTTAATGATGCTTT
GATGATCAGTCTTGGTTTGATTGACTTTTAA
Antitoxin
Download Length: 74 a.a. Molecular weight: 8151.15 Da Isoelectric Point: 4.7769
>AT179333 WP_004174006.1 NZ_CP063904:4379053-4379274 [Klebsiella pneumoniae]
MRTVNYSEARQNLADVLESAVTGVPVTITRRGHKSAVIISAEEFERYQAARMDDEFAAIMAVHGDEIRELADK
MRTVNYSEARQNLADVLESAVTGVPVTITRRGHKSAVIISAEEFERYQAARMDDEFAAIMAVHGDEIRELADK
Download Length: 222 bp
>AT179333 NZ_CP084703:496091-496369 [Bacillus shivajii]
GTGTCCGAAGAGAACACAAAAAAAATTATGGTAAGCTTACCGCAACATTTAGTGAACGAACTTGATGGTTTACTGGAAAG
ACAGAATGTTAACCGCAGTGAAATAATTCACCAAGCTACGAAAATGTACTTGAGAGAACAAAAGAAACAACAAATCCGCG
AAACGATGCAACAAGGCTATATGGAAATGGCGAAAATTAACTTGAACATTGCAACAGAATCCTTTCTTGTTGAGGAGGAG
GCCGAGAATACGTTGGATCGCTTAGTTAGTGGGGTGTAA
GTGTCCGAAGAGAACACAAAAAAAATTATGGTAAGCTTACCGCAACATTTAGTGAACGAACTTGATGGTTTACTGGAAAG
ACAGAATGTTAACCGCAGTGAAATAATTCACCAAGCTACGAAAATGTACTTGAGAGAACAAAAGAAACAACAAATCCGCG
AAACGATGCAACAAGGCTATATGGAAATGGCGAAAATTAACTTGAACATTGCAACAGAATCCTTTCTTGTTGAGGAGGAG
GCCGAGAATACGTTGGATCGCTTAGTTAGTGGGGTGTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0H3GUD1 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A5E5YJY7 |