Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/-
Location 1485767..1486421 Replicon chromosome
Accession NZ_CP063073
Organism Pseudomonas poae strain PMA22

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag IMF22_RS06945 Protein ID WP_159957548.1
Coordinates 1486071..1486421 (-) Length 117 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag IMF22_RS06940 Protein ID WP_197627696.1
Coordinates 1485767..1486081 (-) Length 105 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IMF22_RS06930 1481331..1484894 + 3564 WP_197627694.1 type VI secretion system membrane subunit TssM -
IMF22_RS06935 1484904..1485566 + 663 WP_197627695.1 type VI secretion system-associated protein TagF -
IMF22_RS06940 1485767..1486081 - 315 WP_197627696.1 transcriptional regulator Antitoxin
IMF22_RS06945 1486071..1486421 - 351 WP_159957548.1 toxin Toxin
IMF22_RS06950 1486656..1488251 - 1596 WP_197627697.1 gamma-glutamyltransferase family protein -
IMF22_RS06955 1489502..1490965 - 1464 WP_106579876.1 NADH-quinone oxidoreductase subunit NuoN -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 13712.59 Da        Isoelectric Point: 9.7549

>T177577 WP_159957548.1 NZ_CP063073:c1486421-1486071 [Pseudomonas poae]
MDALFIELPAFERHRKDYLSDALFQGFQQELMRNPEAGDVIEGTGGLRKVRFVDERRNKGKRGGLRVIYYWWSGGTQFWL
FTLYGKHEQDDLAPHHKKALKHLLDREIKARTQHET

Download         Length: 351 bp

>T177577 NZ_CP083585:179079-179186 [Escherichia coli]
ATGACGCTCGCAGAGCTGGGCATGGCCTTCTGGCATGATTTAGCGTCTCCGGTCATTGATGACATTCTTGCCAGTATGAT
CGTGAACTGGCTGAACAAGCGGAAGTAA

Antitoxin


Download         Length: 105 a.a.        Molecular weight: 11675.49 Da        Isoelectric Point: 10.7906

>AT177577 WP_197627696.1 NZ_CP063073:c1486081-1485767 [Pseudomonas poae]
MKREIFSELVEGFGALADERQGKVTLRTHKVQLNNLAPLTAEEVVAVRQQLNLSRSVFAMYLRTNLRTLENWEQGRAKPN
AQATTLIRLVARFPETVAQLAALG

Download         Length: 315 bp

>AT177577 NZ_CP083585:c179031-178965 [Escherichia coli]
GGTCTAGATGCAAGAATGGCCCCCGTGATGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References