Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) ldrD-rdlD/Ldr(toxin)
Location 2211311..2211525 Replicon chromosome
Accession NZ_CP062774
Organism Escherichia coli O157:H7 strain Z563

Toxin (Protein)


Gene name ldrD Uniprot ID J7R083
Locus tag ILQ31_RS11105 Protein ID WP_000170963.1
Coordinates 2211311..2211418 (-) Length 36 a.a.

Antitoxin (RNA)


Gene name rdlD
Locus tag -
Coordinates 2211466..2211525 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ILQ31_RS11075 2206620..2207702 + 1083 WP_000804726.1 peptide chain release factor 1 -
ILQ31_RS11080 2207702..2208535 + 834 WP_000456466.1 peptide chain release factor N(5)-glutamine methyltransferase -
ILQ31_RS11085 2208532..2208924 + 393 WP_000200380.1 invasion regulator SirB2 -
ILQ31_RS11090 2208928..2209737 + 810 WP_001257044.1 invasion regulator SirB1 -
ILQ31_RS11095 2209773..2210627 + 855 WP_000811067.1 3-deoxy-8-phosphooctulonate synthase -
ILQ31_RS11100 2210775..2210882 - 108 WP_000170954.1 type I toxin-antitoxin system toxin Ldr family protein -
- 2210935..2210996 + 62 NuclAT_24 - -
- 2210935..2210996 + 62 NuclAT_24 - -
- 2210935..2210996 + 62 NuclAT_24 - -
- 2210935..2210996 + 62 NuclAT_24 - -
- 2210935..2210996 + 62 NuclAT_26 - -
- 2210935..2210996 + 62 NuclAT_26 - -
- 2210935..2210996 + 62 NuclAT_26 - -
- 2210935..2210996 + 62 NuclAT_26 - -
- 2210935..2210996 + 62 NuclAT_28 - -
- 2210935..2210996 + 62 NuclAT_28 - -
- 2210935..2210996 + 62 NuclAT_28 - -
- 2210935..2210996 + 62 NuclAT_28 - -
- 2210935..2210996 + 62 NuclAT_30 - -
- 2210935..2210996 + 62 NuclAT_30 - -
- 2210935..2210996 + 62 NuclAT_30 - -
- 2210935..2210996 + 62 NuclAT_30 - -
- 2210935..2210996 + 62 NuclAT_32 - -
- 2210935..2210996 + 62 NuclAT_32 - -
- 2210935..2210996 + 62 NuclAT_32 - -
- 2210935..2210996 + 62 NuclAT_32 - -
- 2210935..2210997 + 63 NuclAT_17 - -
- 2210935..2210997 + 63 NuclAT_17 - -
- 2210935..2210997 + 63 NuclAT_17 - -
- 2210935..2210997 + 63 NuclAT_17 - -
- 2210935..2210997 + 63 NuclAT_18 - -
- 2210935..2210997 + 63 NuclAT_18 - -
- 2210935..2210997 + 63 NuclAT_18 - -
- 2210935..2210997 + 63 NuclAT_18 - -
- 2210935..2210997 + 63 NuclAT_19 - -
- 2210935..2210997 + 63 NuclAT_19 - -
- 2210935..2210997 + 63 NuclAT_19 - -
- 2210935..2210997 + 63 NuclAT_19 - -
- 2210935..2210997 + 63 NuclAT_20 - -
- 2210935..2210997 + 63 NuclAT_20 - -
- 2210935..2210997 + 63 NuclAT_20 - -
- 2210935..2210997 + 63 NuclAT_20 - -
- 2210935..2210997 + 63 NuclAT_22 - -
- 2210935..2210997 + 63 NuclAT_22 - -
- 2210935..2210997 + 63 NuclAT_22 - -
- 2210935..2210997 + 63 NuclAT_22 - -
- 2210935..2210997 + 63 NuclAT_23 - -
- 2210935..2210997 + 63 NuclAT_23 - -
- 2210935..2210997 + 63 NuclAT_23 - -
- 2210935..2210997 + 63 NuclAT_23 - -
ILQ31_RS11105 2211311..2211418 - 108 WP_000170963.1 small toxic polypeptide LdrB Toxin
- 2211466..2211525 + 60 NuclAT_25 - Antitoxin
- 2211466..2211525 + 60 NuclAT_25 - Antitoxin
- 2211466..2211525 + 60 NuclAT_25 - Antitoxin
- 2211466..2211525 + 60 NuclAT_25 - Antitoxin
- 2211466..2211525 + 60 NuclAT_27 - Antitoxin
- 2211466..2211525 + 60 NuclAT_27 - Antitoxin
- 2211466..2211525 + 60 NuclAT_27 - Antitoxin
- 2211466..2211525 + 60 NuclAT_27 - Antitoxin
- 2211466..2211525 + 60 NuclAT_29 - Antitoxin
- 2211466..2211525 + 60 NuclAT_29 - Antitoxin
- 2211466..2211525 + 60 NuclAT_29 - Antitoxin
- 2211466..2211525 + 60 NuclAT_29 - Antitoxin
- 2211466..2211525 + 60 NuclAT_31 - Antitoxin
- 2211466..2211525 + 60 NuclAT_31 - Antitoxin
- 2211466..2211525 + 60 NuclAT_31 - Antitoxin
- 2211466..2211525 + 60 NuclAT_31 - Antitoxin
- 2211466..2211525 + 60 NuclAT_33 - Antitoxin
- 2211466..2211525 + 60 NuclAT_33 - Antitoxin
- 2211466..2211525 + 60 NuclAT_33 - Antitoxin
- 2211466..2211525 + 60 NuclAT_33 - Antitoxin
ILQ31_RS11110 2211817..2212917 - 1101 WP_001301956.1 sodium-potassium/proton antiporter ChaA -
ILQ31_RS11115 2213187..2213417 + 231 WP_001146444.1 putative cation transport regulator ChaB -
ILQ31_RS11120 2213578..2214273 + 696 WP_001301489.1 glutathione-specific gamma-glutamylcyclotransferase -
ILQ31_RS11125 2214317..2214670 - 354 WP_001169669.1 DsrE/F sulfur relay family protein YchN -
ILQ31_RS11130 2214856..2216250 + 1395 WP_000086192.1 inverse autotransporter invasin YchO -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Type I toxin-antitoxin system, toxin Ldr

(1-35)


Sequences

Toxin        


Download         Length: 36 a.a.        Molecular weight: 3971.74 Da        Isoelectric Point: 11.4779

>T176458 WP_000170963.1 NZ_CP062774:c2211418-2211311 [Escherichia coli O157:H7]
MTLAQFAMTFWHDLAAPILAGIITAAIVGWWRNRK

Download         Length: 108 bp

>T176458 NZ_CP082821:c6099944-6099666 [Pseudomonas aeruginosa]
ATGATTCTGACCTTTCGCTGCGACGAGACTCGTCAGCTTTTTGAGACGGGTCTTTCGAGGCGGTGGGGAGCGATCCTCAC
AGTCGCTACGCGTAAGCTCGCAATGCTTCATGCGGCTACGGAGCTTCGAGACTTGCGCTCTCCACCTGGAAACCGGTTGG
AGCCGTTGCAGGGAAAGCGGGCGGGCCAACATAGCATCAGGATCAATGACCAGTGGCGTGTCTGTTTCGTCTGGACGGAT
GCGGGTCCCGAAGAAGTCGAAATAGTTGATTACCACTGA

Antitoxin


Download         Length: 60 bp

>AT176458 NZ_CP062774:2211466-2211525 [Escherichia coli O157:H7]
GTCTGGTTTCAAGATTAGCCCTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Download structure file

References