Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) symER/SymE(toxin)
Location 4811839..4812251 Replicon chromosome
Accession NZ_CP062746
Organism Escherichia coli O157:H7 strain Z1504

Toxin (Protein)


Gene name symE Uniprot ID Q8FA88
Locus tag ILQ42_RS24075 Protein ID WP_000132630.1
Coordinates 4811910..4812251 (+) Length 114 a.a.

Antitoxin (RNA)


Gene name symR
Locus tag -
Coordinates 4811839..4811915 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ILQ42_RS24065 4808466..4809935 + 1470 WP_001302468.1 type I restriction-modification system subunit M -
ILQ42_RS24070 4809935..4811689 + 1755 WP_000110082.1 restriction endonuclease subunit S -
- 4811839..4811915 - 77 NuclAT_14 - Antitoxin
- 4811839..4811915 - 77 NuclAT_14 - Antitoxin
- 4811839..4811915 - 77 NuclAT_14 - Antitoxin
- 4811839..4811915 - 77 NuclAT_14 - Antitoxin
- 4811839..4811915 - 77 NuclAT_15 - Antitoxin
- 4811839..4811915 - 77 NuclAT_15 - Antitoxin
- 4811839..4811915 - 77 NuclAT_15 - Antitoxin
- 4811839..4811915 - 77 NuclAT_15 - Antitoxin
ILQ42_RS24075 4811910..4812251 + 342 WP_000132630.1 endoribonuclease SymE Toxin
ILQ42_RS24080 4812298..4813461 - 1164 WP_001304006.1 DUF1524 domain-containing protein -
ILQ42_RS24085 4813509..4814390 - 882 WP_001304007.1 DUF262 domain-containing protein -
ILQ42_RS24090 4814487..4814651 - 165 WP_000394274.1 DUF1127 domain-containing protein -
ILQ42_RS24095 4814828..4816240 + 1413 WP_000199295.1 PLP-dependent aminotransferase family protein -
ILQ42_RS24100 4816483..4816683 - 201 WP_001310455.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - espX6 4804038..4825271 21233


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin SymE-like

(20-71)


Sequences

Toxin        


Download         Length: 114 a.a.        Molecular weight: 12294.13 Da        Isoelectric Point: 8.4982

>T176120 WP_000132630.1 NZ_CP062746:4811910-4812251 [Escherichia coli O157:H7]
MTDTHSIAQPFEAEVSPANNRQLTVSYASRYPDYSRIPAITLKGQWLEAAGFATGTVVDVKVMEGCIVLTAQPPAAAESE
LMQSLRQVCKLSARKQRQVQEFIGVIAGKQKVA

Download         Length: 342 bp

>T176120 NZ_CP082358:c20494-20078 [Escherichia coli]
GTGAACAAGACTTATATGCTTGATACCTGTATCTGCTCGTTCATCATGCGTGAACAGCCAGAAGCCGTCCTGAAGCGTCT
GGAGCAGGCGGTGCTACGCGGCCACCGTATAGTGGTCTCGGCCATCACCTACTCTGAAATGCGCTTCGGGGCTACCGGCC
CAAAGGCCTCACCACGTCACGTCCAACTGGTCGATGAATTCTGCGCCCGCCTCGATGCCATCCTGCCCTGGGATCGCGCC
GCAGTAGACGCCACCACGAAGATTAAAGTGGCACTGCGGCTGGCCGGGACGCCGATCGGCCCGAACGACACGGCGATTGC
CGGGCACGCCATCGCCGCCGGGGCGATACTGGTGACGAATAATACAAGAGAATTTGAGCGGGTGCCTGACCTGGTGCTGG
AAGACTGGGTGAAGTAA

Antitoxin


Download         Length: 77 bp

>AT176120 NZ_CP062746:c4811915-4811839 [Escherichia coli O157:H7]
AGTCATAACTGCTATTCCCTATAAATAGTGATTGTGATTAGCGGTGCGGGTGTGTTGGCGCACATCCGCACCGCGCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0E0Y5T0

Antitoxin

Download structure file

References