Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) symER/SymE(toxin)
Location 4824999..4825411 Replicon chromosome
Accession NZ_CP062744
Organism Escherichia coli O157:H7 strain Z1615

Toxin (Protein)


Gene name symE Uniprot ID Q8FA88
Locus tag ILQ43_RS24185 Protein ID WP_000132630.1
Coordinates 4825070..4825411 (+) Length 114 a.a.

Antitoxin (RNA)


Gene name symR
Locus tag -
Coordinates 4824999..4825075 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ILQ43_RS24175 4821626..4823095 + 1470 WP_001302468.1 type I restriction-modification system subunit M -
ILQ43_RS24180 4823095..4824849 + 1755 WP_000110082.1 restriction endonuclease subunit S -
- 4824999..4825075 - 77 NuclAT_14 - Antitoxin
- 4824999..4825075 - 77 NuclAT_14 - Antitoxin
- 4824999..4825075 - 77 NuclAT_14 - Antitoxin
- 4824999..4825075 - 77 NuclAT_14 - Antitoxin
- 4824999..4825075 - 77 NuclAT_15 - Antitoxin
- 4824999..4825075 - 77 NuclAT_15 - Antitoxin
- 4824999..4825075 - 77 NuclAT_15 - Antitoxin
- 4824999..4825075 - 77 NuclAT_15 - Antitoxin
ILQ43_RS24185 4825070..4825411 + 342 WP_000132630.1 endoribonuclease SymE Toxin
ILQ43_RS24190 4825458..4826621 - 1164 WP_001304006.1 DUF1524 domain-containing protein -
ILQ43_RS24195 4826669..4827550 - 882 WP_001304007.1 DUF262 domain-containing protein -
ILQ43_RS24200 4827647..4827811 - 165 WP_000394274.1 DUF1127 domain-containing protein -
ILQ43_RS24205 4827988..4829400 + 1413 WP_000199295.1 PLP-dependent aminotransferase family protein -
ILQ43_RS24210 4829643..4829843 - 201 WP_001310455.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - espX6 4817198..4838431 21233


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin SymE-like

(20-71)


Sequences

Toxin        


Download         Length: 114 a.a.        Molecular weight: 12294.13 Da        Isoelectric Point: 8.4982

>T176082 WP_000132630.1 NZ_CP062744:4825070-4825411 [Escherichia coli O157:H7]
MTDTHSIAQPFEAEVSPANNRQLTVSYASRYPDYSRIPAITLKGQWLEAAGFATGTVVDVKVMEGCIVLTAQPPAAAESE
LMQSLRQVCKLSARKQRQVQEFIGVIAGKQKVA

Download         Length: 342 bp

>T176082 NZ_CP082353:11438-11719 [Providencia rettgeri]
ATGATCTATAAACTTGAATTCGATAAGCGTGCGTTAAAAGAATGGCAAAAATTGGCTCCCCCGATTAGAAATCAATTTAA
AAAGAAATTAGCAGAGCGTCTTGAAAACCCCTTTGTTCCATCAGCTCAACTGAGTGGTAAACACAATCGTTATAAAATAA
AACTACGGTCATTAGGCTACCGCTTAGTTTATGAGGTAGTTGATGAGAAAATTGTTTTGTTGGTCATTGCGGTTGGCAAA
AGAGAGGGAAACGCTATCTACTTTTCGTCGAACGAACGTTAA

Antitoxin


Download         Length: 77 bp

>AT176082 NZ_CP062744:c4825075-4824999 [Escherichia coli O157:H7]
AGTCATAACTGCTATTCCCTATAAATAGTGATTGTGATTAGCGGTGCGGGTGTGTTGGCGCACATCCGCACCGCGCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0E0Y5T0

Antitoxin

Download structure file

References