Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) paaR-paaA-parE/-
Location 3066372..3066843 Replicon chromosome
Accession NZ_CP062705
Organism Escherichia coli O157:H7 strain Z1833

Toxin (Protein)


Gene name parE_1 Uniprot ID A0A0D7C2L1
Locus tag ILQ61_RS15570 Protein ID WP_001303511.1
Coordinates 3066565..3066843 (+) Length 93 a.a.

Antitoxin (Protein)


Gene name paaA Uniprot ID Q8XAD5
Locus tag ILQ61_RS15565 Protein ID WP_001302048.1
Coordinates 3066372..3066563 (+) Length 64 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ILQ61_RS15525 3061579..3062163 - 585 WP_000206793.1 DUF551 domain-containing protein -
ILQ61_RS15530 3062220..3062615 - 396 WP_001118159.1 DUF977 family protein -
ILQ61_RS15535 3062631..3063400 - 770 Protein_3038 DUF1627 domain-containing protein -
ILQ61_RS15540 3063426..3064166 - 741 WP_000788938.1 ATP-binding protein -
ILQ61_RS15545 3064173..3065135 - 963 WP_000095669.1 helix-turn-helix domain-containing protein -
ILQ61_RS15550 3065158..3065583 - 426 WP_000693943.1 Rha family transcriptional regulator -
ILQ61_RS15555 3065580..3065882 - 303 WP_000172738.1 transcriptional regulator -
ILQ61_RS15560 3065980..3066351 + 372 WP_001169686.1 hypothetical protein -
ILQ61_RS15565 3066372..3066563 + 192 WP_001302048.1 hypothetical protein Antitoxin
ILQ61_RS15570 3066565..3066843 + 279 WP_001303511.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
ILQ61_RS15575 3067196..3067495 + 300 WP_001240334.1 hypothetical protein -
ILQ61_RS15580 3067567..3067785 + 219 WP_001171930.1 hypothetical protein -
ILQ61_RS15585 3068354..3068542 + 189 WP_000449192.1 cell division inhibition protein DicB -
ILQ61_RS15590 3068539..3068730 + 192 WP_001090200.1 DUF1482 family protein -
ILQ61_RS15595 3068823..3071294 + 2472 WP_072612735.1 exonuclease -
ILQ61_RS15600 3071359..3071607 + 249 WP_000113189.1 excisionase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - nleA/espI 3025132..3076850 51718


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-91)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10661.25 Da        Isoelectric Point: 5.5647

>T175450 WP_001303511.1 NZ_CP062705:3066565-3066843 [Escherichia coli O157:H7]
MLPVLWLESADTDLDDITSYIARFDIDAAERLWQRLRGCVLPLSEHPYLYPPSDRVPGLREIVAHPNYIILYRVTTSSVE
VVNVIHARRQFP

Download         Length: 279 bp

>T175450 NZ_CP081988:1438293-1438586 [Shinella oryzae]
ATGCCATTCATCCTATCGGTCCAAGCGGAAGAGGATGTAATTTCAATTGCGGAAGAAGGCATTCGTATCTTCGGAGCATT
GGTTGCTAAACGATATCATGATGAGCTCTTCGATTTGCTCGAGCTAATTGCCAGCAATCCACGAATGGCGCGTGAGCGCC
ATGAAATTTCTCCGCCTGTTAGGATCCATCCCTTCAAGGCACACCTTGTAGTTTATCGCATCAAAGAGGACGGAAGCGTC
TTTGTGATCCGTATCAGGCATAGCCACGAGGATTGGGCAACAGATTCGCTCTAG

Antitoxin


Download         Length: 64 a.a.        Molecular weight: 7463.47 Da        Isoelectric Point: 8.6828

>AT175450 WP_001302048.1 NZ_CP062705:3066372-3066563 [Escherichia coli O157:H7]
MNRALSPMVSEFETIEQENSYNEWLRAKVATSLADPRPAIPHDEVERRMAERFAKMRKERSKQ

Download         Length: 192 bp

>AT175450 NZ_CP081988:1438039-1438293 [Shinella oryzae]
ATGGCGACGATGAACGTATCCCTTCCCGACCCCATGAAAGATTGGGTTGAAGCCCAAACTAAGACCGGTCGGTATTCGAA
TGCGAGCGATTACGTCAGAGACTTGATCCGCAGAGATCAGGCCCGTACCGACAAGATCGCCGAGATGCAGCGGTTTGTCG
ATGACGGAATTAGAAGCGGTGTTGGGAGCCGTTCAGCGGACGATCTGTTTACTGCAGCCACTACACGAGCCGAGATCAGC
CGCGGACGCGCTTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 5CZF
PDB 5CW7
PDB 5CZE

Antitoxin

Source ID Structure
PDB 5CZF
PDB 3ZBE
PDB 5CW7
AlphaFold DB A0A829CTP0

References