Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
| Location | 2378484..2379001 | Replicon | chromosome |
| Accession | NZ_CP062401 | ||
| Organism | Staphylococcus aureus strain NAS_OP_098 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | A0A3A3ATA4 |
| Locus tag | IF770_RS11725 | Protein ID | WP_000113265.1 |
| Coordinates | 2378735..2379001 (+) | Length | 89 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | T1YB60 |
| Locus tag | IF770_RS11720 | Protein ID | WP_000584499.1 |
| Coordinates | 2378484..2378735 (+) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF770_RS11690 (2374182) | 2374182..2374901 | + | 720 | WP_000479576.1 | amino acid ABC transporter permease | - |
| IF770_RS11695 (2374898) | 2374898..2375629 | + | 732 | WP_000615461.1 | amino acid ABC transporter ATP-binding protein | - |
| IF770_RS11700 (2375726) | 2375726..2376976 | - | 1251 | WP_001012225.1 | FemA/FemB family glycyltransferase FmhA | - |
| IF770_RS11705 (2377231) | 2377231..2377593 | + | 363 | WP_000819843.1 | DUF4467 domain-containing protein | - |
| IF770_RS11710 (2377612) | 2377612..2378211 | + | 600 | WP_000162810.1 | DsbA family protein | - |
| IF770_RS11715 (2378239) | 2378239..2378319 | + | 81 | WP_223197974.1 | hypothetical protein | - |
| IF770_RS11720 (2378484) | 2378484..2378735 | + | 252 | WP_000584499.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| IF770_RS11725 (2378735) | 2378735..2379001 | + | 267 | WP_000113265.1 | Txe/YoeB family addiction module toxin | Toxin |
| IF770_RS11730 (2379036) | 2379036..2379107 | + | 72 | Protein_2280 | hypothetical protein | - |
| IF770_RS11735 (2379296) | 2379296..2380843 | + | 1548 | WP_000727772.1 | zinc ABC transporter substrate-binding lipoprotein AdcA | - |
| IF770_RS11740 (2381029) | 2381029..2381496 | + | 468 | WP_000153347.1 | SRPBCC domain-containing protein | - |
| IF770_RS11745 (2381580) | 2381580..2381762 | + | 183 | WP_000230292.1 | hypothetical protein | - |
| IF770_RS11750 (2381979) | 2381979..2382803 | + | 825 | WP_000572038.1 | formate/nitrite transporter family protein | - |
| IF770_RS11755 (2383037) | 2383037..2383573 | + | 537 | WP_000169317.1 | GNAT family N-acetyltransferase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10436.96 Da Isoelectric Point: 10.0573
>T174897 WP_000113265.1 NZ_CP062401:2378735-2379001 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNNKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
MARLNITFSPQAFEDYKYFQQNNKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
Download Length: 267 bp
>T174897 NZ_CP081706:c68166-67873 [Escherichia coli]
ATGGCTGTCGAGTTTAGAGACACGTGGCTGGAAGCGTTTTACGAGGATGACCAAAACCACAGGAGGATACCTAGTACCAT
CGAAGGCGCATTGTTCAGGAAGCTGGAGATCTTGGACGCAGCGACCCAGGAGTCAGACTTGAGAATCCCTCCGGGTAACC
GCTTCGAGCACCTTGAAGGGAATATGGCCGGGTGGTGTTCCATCCGGGTAAACAAGCAATACCGGCTGATCTTTAGATGG
ATCGATGGCGTTGCCCAAGATACTTATCTGGATCCTCATGTTTACAGGGGCTAG
ATGGCTGTCGAGTTTAGAGACACGTGGCTGGAAGCGTTTTACGAGGATGACCAAAACCACAGGAGGATACCTAGTACCAT
CGAAGGCGCATTGTTCAGGAAGCTGGAGATCTTGGACGCAGCGACCCAGGAGTCAGACTTGAGAATCCCTCCGGGTAACC
GCTTCGAGCACCTTGAAGGGAATATGGCCGGGTGGTGTTCCATCCGGGTAAACAAGCAATACCGGCTGATCTTTAGATGG
ATCGATGGCGTTGCCCAAGATACTTATCTGGATCCTCATGTTTACAGGGGCTAG
Antitoxin
Download Length: 84 a.a. Molecular weight: 9433.60 Da Isoelectric Point: 4.3407
>AT174897 WP_000584499.1 NZ_CP062401:2378484-2378735 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
Download Length: 252 bp
>AT174897 NZ_CP081706:c67858-67532 [Escherichia coli]
ATGAGAAACACAAAACGTCGCCCAGTTACGGTCGGTCAGATGCTGGTAACCGAGTTCCTGGAGCCTATGAACATCGAGAT
CAACGAACTGGCTGAAGCCATGGGTGTGCACAGAAACACCCTGAGTCGGATCGTTCACGACAAGGGGGCATTGACCGCAC
CCATGTCAATCAAACTGGCAGCGGCCTTGGGTAACACGCCGGAGTTCTGGCTCAATATTCAGCACTCAGTAGAGTTGTGG
GATGTTCGGCATAGAGCCTTTGAGCAGGAAGCAAAGAATGTTAAACGAGTAACGCCTCACTTGGAGAACAGGGAAGCAGT
TATTTAG
ATGAGAAACACAAAACGTCGCCCAGTTACGGTCGGTCAGATGCTGGTAACCGAGTTCCTGGAGCCTATGAACATCGAGAT
CAACGAACTGGCTGAAGCCATGGGTGTGCACAGAAACACCCTGAGTCGGATCGTTCACGACAAGGGGGCATTGACCGCAC
CCATGTCAATCAAACTGGCAGCGGCCTTGGGTAACACGCCGGAGTTCTGGCTCAATATTCAGCACTCAGTAGAGTTGTGG
GATGTTCGGCATAGAGCCTTTGAGCAGGAAGCAAAGAATGTTAAACGAGTAACGCCTCACTTGGAGAACAGGGAAGCAGT
TATTTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|