Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
| Location | 2309214..2309731 | Replicon | chromosome |
| Accession | NZ_CP062352 | ||
| Organism | Staphylococcus aureus strain NAS_AN_233 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | A0A3A3ATA4 |
| Locus tag | IF733_RS11255 | Protein ID | WP_000113265.1 |
| Coordinates | 2309465..2309731 (+) | Length | 89 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | T1YB60 |
| Locus tag | IF733_RS11250 | Protein ID | WP_000584499.1 |
| Coordinates | 2309214..2309465 (+) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF733_RS11220 (2304912) | 2304912..2305631 | + | 720 | WP_000479576.1 | amino acid ABC transporter permease | - |
| IF733_RS11225 (2305628) | 2305628..2306359 | + | 732 | WP_000615461.1 | amino acid ABC transporter ATP-binding protein | - |
| IF733_RS11230 (2306456) | 2306456..2307706 | - | 1251 | WP_001012225.1 | FemA/FemB family glycyltransferase FmhA | - |
| IF733_RS11235 (2307961) | 2307961..2308323 | + | 363 | WP_000819843.1 | DUF4467 domain-containing protein | - |
| IF733_RS11240 (2308342) | 2308342..2308941 | + | 600 | WP_000162810.1 | DsbA family protein | - |
| IF733_RS11245 (2308969) | 2308969..2309049 | + | 81 | WP_223197974.1 | hypothetical protein | - |
| IF733_RS11250 (2309214) | 2309214..2309465 | + | 252 | WP_000584499.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| IF733_RS11255 (2309465) | 2309465..2309731 | + | 267 | WP_000113265.1 | Txe/YoeB family addiction module toxin | Toxin |
| IF733_RS11260 (2309766) | 2309766..2309837 | + | 72 | Protein_2188 | hypothetical protein | - |
| IF733_RS11265 (2310026) | 2310026..2311573 | + | 1548 | WP_000727772.1 | zinc ABC transporter substrate-binding lipoprotein AdcA | - |
| IF733_RS11270 (2311759) | 2311759..2312226 | + | 468 | WP_000153347.1 | SRPBCC domain-containing protein | - |
| IF733_RS11275 (2312310) | 2312310..2312492 | + | 183 | WP_000230292.1 | hypothetical protein | - |
| IF733_RS11280 (2312709) | 2312709..2313533 | + | 825 | WP_000572038.1 | formate/nitrite transporter family protein | - |
| IF733_RS11285 (2313767) | 2313767..2314303 | + | 537 | WP_000169317.1 | GNAT family N-acetyltransferase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10436.96 Da Isoelectric Point: 10.0573
>T174523 WP_000113265.1 NZ_CP062352:2309465-2309731 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNNKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
MARLNITFSPQAFEDYKYFQQNNKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
Download Length: 267 bp
>T174523 NZ_CP081178:5731513-5731767 [Pseudomonas mandelii]
ATGCAAACTATCAACTACACCACCGCACGGGCCCATCTGGCCGAAACCATGGATAGGGTCAATGAAGACCGTGCGCCGTT
GCTGGTTACTCGCCAGAAAGGCGAACCCGTAGTGATGATGTCTCTGGCGGAGTACAACGCTCTCGAAGAGACCGCCTATC
TGCTGCGCTCCCCCGCCAATGCTGAGCGCCTGATCAAATCGATCAGCAACTTGCGTGCAGGGAAGACCCAATCCAGGCAA
CTCATCGAAGAATGA
ATGCAAACTATCAACTACACCACCGCACGGGCCCATCTGGCCGAAACCATGGATAGGGTCAATGAAGACCGTGCGCCGTT
GCTGGTTACTCGCCAGAAAGGCGAACCCGTAGTGATGATGTCTCTGGCGGAGTACAACGCTCTCGAAGAGACCGCCTATC
TGCTGCGCTCCCCCGCCAATGCTGAGCGCCTGATCAAATCGATCAGCAACTTGCGTGCAGGGAAGACCCAATCCAGGCAA
CTCATCGAAGAATGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9433.60 Da Isoelectric Point: 4.3407
>AT174523 WP_000584499.1 NZ_CP062352:2309214-2309465 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
Download Length: 252 bp
>AT174523 NZ_CP081178:5731764-5732018 [Pseudomonas mandelii]
ATGAATATTGAGTTCACTCCCGAAGGTTGGGACGACTATTTATGGTTCCAACAAAATGACAAGGCCGGACTCAAACGAAT
CAACCTGCTCATCACAGCTATCCAGCGTGAACCATTCGACGGGCTCGGAAAGCCTGAGCCGCTCAAACACAATTTGAGCG
GCTTTTGGTCACGTCGAATTACTGCTGAGCATCGTTTGGTCTACGAGGTCGATGAAGGTGAGATTCGCGTCGTGATGTGT
CGATATCACTACTGA
ATGAATATTGAGTTCACTCCCGAAGGTTGGGACGACTATTTATGGTTCCAACAAAATGACAAGGCCGGACTCAAACGAAT
CAACCTGCTCATCACAGCTATCCAGCGTGAACCATTCGACGGGCTCGGAAAGCCTGAGCCGCTCAAACACAATTTGAGCG
GCTTTTGGTCACGTCGAATTACTGCTGAGCATCGTTTGGTCTACGAGGTCGATGAAGGTGAGATTCGCGTCGTGATGTGT
CGATATCACTACTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|