Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
| Location | 2061360..2061877 | Replicon | chromosome |
| Accession | NZ_CP062336 | ||
| Organism | Staphylococcus aureus strain NAS_NP_161 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | T1YC79 |
| Locus tag | IF748_RS10285 | Protein ID | WP_000113262.1 |
| Coordinates | 2061360..2061626 (-) | Length | 89 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | T1YB60 |
| Locus tag | IF748_RS10290 | Protein ID | WP_000584499.1 |
| Coordinates | 2061626..2061877 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF748_RS10255 (2056783) | 2056783..2057319 | - | 537 | WP_000169317.1 | GNAT family N-acetyltransferase | - |
| IF748_RS10260 (2057553) | 2057553..2058377 | - | 825 | WP_000572040.1 | formate/nitrite transporter family protein | - |
| IF748_RS10265 (2058594) | 2058594..2058776 | - | 183 | WP_000079142.1 | hypothetical protein | - |
| IF748_RS10270 (2058863) | 2058863..2059330 | - | 468 | WP_000153344.1 | SRPBCC domain-containing protein | - |
| IF748_RS10275 (2059516) | 2059516..2061066 | - | 1551 | WP_000727763.1 | zinc ABC transporter substrate-binding lipoprotein AdcA | - |
| IF748_RS10280 (2061254) | 2061254..2061325 | - | 72 | WP_223200558.1 | hypothetical protein | - |
| IF748_RS10285 (2061360) | 2061360..2061626 | - | 267 | WP_000113262.1 | Txe/YoeB family addiction module toxin | Toxin |
| IF748_RS10290 (2061626) | 2061626..2061877 | - | 252 | WP_000584499.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| IF748_RS10295 (2062042) | 2062042..2062122 | - | 81 | WP_223197974.1 | hypothetical protein | - |
| IF748_RS10300 (2062150) | 2062150..2062749 | - | 600 | WP_240029698.1 | DsbA family protein | - |
| IF748_RS10305 (2062768) | 2062768..2063130 | - | 363 | WP_240029699.1 | DUF4467 domain-containing protein | - |
| IF748_RS10310 (2063385) | 2063385..2064635 | + | 1251 | WP_031837522.1 | FemA/FemB family glycyltransferase FmhA | - |
| IF748_RS10315 (2064732) | 2064732..2065463 | - | 732 | WP_000615461.1 | amino acid ABC transporter ATP-binding protein | - |
| IF748_RS10320 (2065460) | 2065460..2066179 | - | 720 | WP_000479576.1 | amino acid ABC transporter permease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10437.95 Da Isoelectric Point: 9.9143
>T174383 WP_000113262.1 NZ_CP062336:c2061626-2061360 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
Download Length: 267 bp
>T174383 NZ_CP081005:c124903-124556 [Mycobacterium sp. IDR2000157661]
GTGACCCCGGCGCGAGGCCAGGTGTATCGCTGCGATCTCGGCTACGGCGCCAAACCGTGGCTGATCGTGTCCAACAACCA
ACGCAACCGCCACACCGCCGACGTGGTCGCCATCCGACTGACGACCACGTCCCGCCGGCTCCCAACCTGGGTGGCACTCG
CCAGCAGCGATCCGCTGACCGGCTACGCGAACGCCGACAACATCGAAACGCTCGCTAAAGACGAACTCGGCGACTACCTC
GGTGCGCTGTCGCCGGCCACCATGGCCCGCGTCAATACCGCGCTTGCCATCGCGCTCGCCCTGCCCGCGGGGCGCTCCCC
TCGGCCACAACCCCCGCCCACGCATTAA
GTGACCCCGGCGCGAGGCCAGGTGTATCGCTGCGATCTCGGCTACGGCGCCAAACCGTGGCTGATCGTGTCCAACAACCA
ACGCAACCGCCACACCGCCGACGTGGTCGCCATCCGACTGACGACCACGTCCCGCCGGCTCCCAACCTGGGTGGCACTCG
CCAGCAGCGATCCGCTGACCGGCTACGCGAACGCCGACAACATCGAAACGCTCGCTAAAGACGAACTCGGCGACTACCTC
GGTGCGCTGTCGCCGGCCACCATGGCCCGCGTCAATACCGCGCTTGCCATCGCGCTCGCCCTGCCCGCGGGGCGCTCCCC
TCGGCCACAACCCCCGCCCACGCATTAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9433.60 Da Isoelectric Point: 4.3407
>AT174383 WP_000584499.1 NZ_CP062336:c2061877-2061626 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
Download Length: 252 bp
>AT174383 NZ_CP081005:c125172-124906 [Mycobacterium sp. IDR2000157661]
ATGGCGGAAGAATACTCCACACGATTGCGACTCGATGCGTCCACACATCAGCGCCTGCAAGACATTGTCGGAAAGGGCCA
CTACCGCAGCAGCAATGCCGCCATCGTGGACGCCATCAACCGTCTCTGGGACCACGTCTGCGAGCAGGAACTCGACGCGG
CCTACGCCGCCGCGGTTGCCGAGAATCCCTCGTATCCATACGAATCCGTCGCCGAGCGCGCGGCCGCGCGCGCCCGGCGT
AACCGACGCCAGGCGGTCAGCGAGTGA
ATGGCGGAAGAATACTCCACACGATTGCGACTCGATGCGTCCACACATCAGCGCCTGCAAGACATTGTCGGAAAGGGCCA
CTACCGCAGCAGCAATGCCGCCATCGTGGACGCCATCAACCGTCTCTGGGACCACGTCTGCGAGCAGGAACTCGACGCGG
CCTACGCCGCCGCGGTTGCCGAGAATCCCTCGTATCCATACGAATCCGTCGCCGAGCGCGCGGCCGCGCGCGCCCGGCGT
AACCGACGCCAGGCGGTCAGCGAGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|