173914

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-YefM
Location 2082691..2083193 Replicon chromosome
Accession NZ_CP062245
Organism Escherichia coli strain AML003_ev01

Toxin (Protein)


Gene name yoeB Uniprot ID U9YDH0
Locus tag IHN50_RS10315 Protein ID WP_000767829.1
Coordinates 2082691..2082945 (-) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID S1Q063
Locus tag IHN50_RS10320 Protein ID WP_001259255.1
Coordinates 2082942..2083193 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IHN50_RS10285 2077706..2077933 - 228 WP_000234896.1 sulfurtransferase TusA -
IHN50_RS10290 2077947..2079005 - 1059 WP_000492339.1 transport protein YeeE -
IHN50_RS10295 2079184..2080542 - 1359 WP_000019197.1 putrescine/proton symporter PlaP -
IHN50_RS10300 2080532..2080594 - 63 WP_010723108.1 membrane protein YoeI -
IHN50_RS10305 2080809..2081738 - 930 WP_000803351.1 LysR family transcriptional regulator -
IHN50_RS10310 2081784..2082608 - 825 WP_000754737.1 SDR family oxidoreductase -
IHN50_RS10315 2082691..2082945 - 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB Toxin
IHN50_RS10320 2082942..2083193 - 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM Antitoxin
IHN50_RS10325 2083476..2083526 + 51 WP_001364200.1 his operon leader peptide -
IHN50_RS10330 2083672..2084571 + 900 WP_000131782.1 ATP phosphoribosyltransferase -
IHN50_RS10335 2084577..2085881 + 1305 WP_000009594.1 histidinol dehydrogenase -
IHN50_RS10340 2085878..2086948 + 1071 WP_000108941.1 histidinol-phosphate transaminase -
IHN50_RS10345 2086948..2088015 + 1068 WP_000080105.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(2-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10183.58 Da        Isoelectric Point: 8.0353

>T173914 WP_000767829.1 NZ_CP062245:c2082945-2082691 [Escherichia coli]
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY

Download         Length: 255 bp

>T173914 NZ_CP080383:2315045-2315290 [Cryobacterium sp. PAMC25264]
GTGGCAATTACAGCCTCACAAGCAAGGGCTCAGTTGTTCCCGTTGATCGAAAAGGTCAATGAGGACCACATGCCCATCGA
AATCGTCTCCAAGAAGGGCAGCGCGGTTCTCATGTCGCTGGCTGACTACGAGGCACTCGAAGAAACCGCCTACCTGCTGC
GTTCCCCCGCTAACGCGGCGCACCTGCTCGAAAGCATCGCGCAGCACCGGGCCGGCACGGCGAGCGTTCGTCCCCTGGCC
GAGTGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9307.58 Da        Isoelectric Point: 4.7954

>AT173914 WP_001259255.1 NZ_CP062245:c2083193-2082942 [Escherichia coli]
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE

Download         Length: 252 bp

>AT173914 NZ_CP080383:2315287-2315541 [Cryobacterium sp. PAMC25264]
GTGATAATCGCGTTCACGGATGCCGGCTGGGACGACTATCAATATTGGGTCACCACTGACCGGACGATGGTGAAACGCAT
CAACAAGCTCATCGCCGACGTGCAACGCACCCCGTTCACCGGCATCGGTAAACCCGAAGCGCTCAAGCATCAACTCGCCG
GGTACTGGTCCCGCCGCATCACCGATGAACACCGGCTGGTGTACACGGTGGAGCAGAACGAGATCGTCATCATCGCCGCT
CGGCATCACTACTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6NY6
PDB 2A6S
PDB 6OXA
PDB 2A6R
PDB 4V8X
PDB 6OTR
PDB 6OXI
PDB 2A6Q

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9LNR0

References