Detailed information of TA system TA171960

Bioinformatically predicted

Overview

TA module

• Type: I
• Classification (family/domain): SprA2-sprA1AS/-
• Location: 358580..358741
• Replicon: chromosome
• Accession: NZ_CP061041
• Organism: Staphylococcus warneri strain WS479

Toxin (Protein)

• Gene name: SprA2
• Uniprot ID: -
• Locus tag: IAR39_RS01725
• Protein ID: WP_015364873.1
• Coordinates: 358646..358741 (-)
• Length: 32 a.a.

Antitoxin (RNA)

Gene name	sprA1AS
Locus tag	-
Coordinates	358580..358614 (+)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
IAR39_RS01695	353610..354833	-	1224	WP_058710123.1	ABC transporter permease	-
IAR39_RS01700	354826..355566	-	741	WP_002466806.1	ABC transporter ATP-binding protein	-
IAR39_RS01705	355698..356123	+	426	WP_058710124.1	HIT family protein	-
IAR39_RS01710	356201..356572	+	372	WP_119548081.1	YtxH domain-containing protein	-
IAR39_RS01715	356767..357324	+	558	WP_119548079.1	DUF3267 domain-containing protein	-
IAR39_RS01720	357502..358494	+	993	WP_002466825.1	peptidylprolyl isomerase	-
-	358580..358614	+	35	-	-	Antitoxin
IAR39_RS01725	358646..358741	-	96	WP_015364873.1	type I toxin-antitoxin system Fst family toxin	Toxin
IAR39_RS01730	358896..359837	-	942	WP_002466800.1	3'-5' exoribonuclease YhaM	-
IAR39_RS01735	359837..362770	-	2934	WP_187835297.1	AAA family ATPase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Sequences

Toxin

Protein

• Length: 32 a.a.
• Molecular weight: 3610.26 Da
• Isoelectric Point: 8.0878

>T171960 WP_015364873.1 NZ_CP061041:c358741-358646 [Staphylococcus warneri]
MTEIFVHIATTVISGCIVTLFAHWLRHRNDK

Nucleotide

• Length: 96 bp

>T171960 NZ_CP079120:4698122-4698505 [Klebsiella pneumoniae subsp. pneumoniae]
ATGACCTCCGGATCTGCGCTTTTTGATACCAATATTCTTATTGATTTATTTAGCGGGCGTCGCGAAGCCAAACAGGCGCT
GGAGGCCTGGCCACCGCAGAATGCGATCAGTCTGATTACCTGGATGGAGGTGATGGTTGGCGCTAAAAAATATCACCAGG
AGCAGCGCACGCGAATGGCGCTGAGCACCTTTAATATCATTAACATCTCACAGGATATTGCAGAGCGAAGCGTTGCGCTG
CGGCAGGAGTATAAGCTTAAGCTGCCGGATGCCATCATTCTGGCGACGGCGCAACTCCATCGTCTGGAACTAATTACGCG
GAATACGAAGGATTTTGCCGGTATTCCTGGCGTAGTCACGCCGTACGAAATCCACCCTGAATAA

Antitoxin

Nucleotide

• Length: 35 bp

>AT171960 NZ_CP061041:358580-358614 [Staphylococcus warneri]
ACACCAATCCCCTCACTATTTGCGGTAGTGAGGGG

Structures

Antitoxin