Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-YefM
Location 1843792..1844294 Replicon chromosome
Accession NZ_CP060885
Organism Escherichia coli strain EC24

Toxin (Protein)


Gene name yoeB Uniprot ID U9YDH0
Locus tag H9208_RS08765 Protein ID WP_000767829.1
Coordinates 1844040..1844294 (+) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID S1Q063
Locus tag H9208_RS08760 Protein ID WP_001259255.1
Coordinates 1843792..1844043 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H9208_RS08735 (1838969) 1838969..1840036 - 1068 WP_000080093.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB -
H9208_RS08740 (1840036) 1840036..1841106 - 1071 WP_053908449.1 histidinol-phosphate transaminase -
H9208_RS08745 (1841103) 1841103..1842407 - 1305 WP_053908451.1 histidinol dehydrogenase -
H9208_RS08750 (1842413) 1842413..1843312 - 900 WP_000131782.1 ATP phosphoribosyltransferase -
H9208_RS08755 (1843458) 1843458..1843508 - 51 WP_001364200.1 his operon leader peptide -
H9208_RS08760 (1843792) 1843792..1844043 + 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM Antitoxin
H9208_RS08765 (1844040) 1844040..1844294 + 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB Toxin
H9208_RS08770 (1844377) 1844377..1845201 + 825 WP_053908453.1 SDR family oxidoreductase -
H9208_RS08775 (1845247) 1845247..1846176 + 930 WP_053908455.1 LysR substrate-binding domain-containing protein -
H9208_RS08780 (1846391) 1846391..1846453 + 63 WP_010723108.1 membrane protein YoeI -
H9208_RS08785 (1846443) 1846443..1847801 + 1359 WP_000019197.1 putrescine/proton symporter PlaP -
H9208_RS08790 (1847980) 1847980..1849038 + 1059 WP_053908457.1 thiosulfate utilization transporter TsuA/YeeE -
H9208_RS08795 (1849052) 1849052..1849279 + 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(2-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10183.58 Da        Isoelectric Point: 8.0353

>T171323 WP_000767829.1 NZ_CP060885:1844040-1844294 [Escherichia coli]
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY

Download         Length: 255 bp

>T171323 NZ_CP077888:c649890-649624 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9307.58 Da        Isoelectric Point: 4.7954

>AT171323 WP_001259255.1 NZ_CP060885:1843792-1844043 [Escherichia coli]
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE

Download         Length: 252 bp

>AT171323 NZ_CP077888:c650141-649890 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6NY6
PDB 2A6S
PDB 6OXA
PDB 2A6R
PDB 4V8X
PDB 6OTR
PDB 6OXI
PDB 2A6Q

Antitoxin

Source ID Structure
PDB 2A6Q
AlphaFold DB A0A7U9LNR0

References