Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) ldrD-rdlD/Ldr(toxin)
Location 1226479..1226699 Replicon chromosome
Accession NZ_CP060121
Organism Escherichia coli BL21

Toxin (Protein)


Gene name ldrD Uniprot ID E3PKK3
Locus tag FFHJCLDM_RS06000 Protein ID WP_000170951.1
Coordinates 1226479..1226586 (-) Length 36 a.a.

Antitoxin (RNA)


Gene name rdlD
Locus tag -
Coordinates 1226636..1226699 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FFHJCLDM_RS05975 1222325..1223407 + 1083 WP_000804726.1 peptide chain release factor 1 -
FFHJCLDM_RS05980 1223407..1224240 + 834 WP_000456454.1 peptide chain release factor N(5)-glutamine methyltransferase -
FFHJCLDM_RS05985 1224237..1224629 + 393 WP_000200373.1 invasion regulator SirB2 -
FFHJCLDM_RS05990 1224633..1225442 + 810 WP_001257044.1 invasion regulator SirB1 -
FFHJCLDM_RS05995 1225478..1226332 + 855 WP_000811065.1 3-deoxy-8-phosphooctulonate synthase -
FFHJCLDM_RS06000 1226479..1226586 - 108 WP_000170951.1 type I toxin-antitoxin system toxin Ldr family protein Toxin
- 1226636..1226699 + 64 NuclAT_32 - Antitoxin
- 1226636..1226699 + 64 NuclAT_32 - Antitoxin
- 1226636..1226699 + 64 NuclAT_32 - Antitoxin
- 1226636..1226699 + 64 NuclAT_32 - Antitoxin
- 1226636..1226699 + 64 NuclAT_35 - Antitoxin
- 1226636..1226699 + 64 NuclAT_35 - Antitoxin
- 1226636..1226699 + 64 NuclAT_35 - Antitoxin
- 1226636..1226699 + 64 NuclAT_35 - Antitoxin
- 1226636..1226699 + 64 NuclAT_38 - Antitoxin
- 1226636..1226699 + 64 NuclAT_38 - Antitoxin
- 1226636..1226699 + 64 NuclAT_38 - Antitoxin
- 1226636..1226699 + 64 NuclAT_38 - Antitoxin
- 1226636..1226699 + 64 NuclAT_41 - Antitoxin
- 1226636..1226699 + 64 NuclAT_41 - Antitoxin
- 1226636..1226699 + 64 NuclAT_41 - Antitoxin
- 1226636..1226699 + 64 NuclAT_41 - Antitoxin
- 1226636..1226699 + 64 NuclAT_47 - Antitoxin
- 1226636..1226699 + 64 NuclAT_47 - Antitoxin
- 1226636..1226699 + 64 NuclAT_47 - Antitoxin
- 1226636..1226699 + 64 NuclAT_47 - Antitoxin
- 1226636..1226699 + 64 NuclAT_50 - Antitoxin
- 1226636..1226699 + 64 NuclAT_50 - Antitoxin
- 1226636..1226699 + 64 NuclAT_50 - Antitoxin
- 1226636..1226699 + 64 NuclAT_50 - Antitoxin
FFHJCLDM_RS06005 1227014..1227121 - 108 WP_000170963.1 small toxic polypeptide LdrB -
- 1227169..1227234 + 66 NuclAT_30 - -
- 1227169..1227234 + 66 NuclAT_30 - -
- 1227169..1227234 + 66 NuclAT_30 - -
- 1227169..1227234 + 66 NuclAT_30 - -
- 1227169..1227234 + 66 NuclAT_33 - -
- 1227169..1227234 + 66 NuclAT_33 - -
- 1227169..1227234 + 66 NuclAT_33 - -
- 1227169..1227234 + 66 NuclAT_33 - -
- 1227169..1227234 + 66 NuclAT_36 - -
- 1227169..1227234 + 66 NuclAT_36 - -
- 1227169..1227234 + 66 NuclAT_36 - -
- 1227169..1227234 + 66 NuclAT_36 - -
- 1227169..1227234 + 66 NuclAT_39 - -
- 1227169..1227234 + 66 NuclAT_39 - -
- 1227169..1227234 + 66 NuclAT_39 - -
- 1227169..1227234 + 66 NuclAT_39 - -
- 1227169..1227234 + 66 NuclAT_45 - -
- 1227169..1227234 + 66 NuclAT_45 - -
- 1227169..1227234 + 66 NuclAT_45 - -
- 1227169..1227234 + 66 NuclAT_45 - -
- 1227169..1227234 + 66 NuclAT_48 - -
- 1227169..1227234 + 66 NuclAT_48 - -
- 1227169..1227234 + 66 NuclAT_48 - -
- 1227169..1227234 + 66 NuclAT_48 - -
- 1227169..1227236 + 68 NuclAT_16 - -
- 1227169..1227236 + 68 NuclAT_16 - -
- 1227169..1227236 + 68 NuclAT_16 - -
- 1227169..1227236 + 68 NuclAT_16 - -
- 1227169..1227236 + 68 NuclAT_18 - -
- 1227169..1227236 + 68 NuclAT_18 - -
- 1227169..1227236 + 68 NuclAT_18 - -
- 1227169..1227236 + 68 NuclAT_18 - -
- 1227169..1227236 + 68 NuclAT_20 - -
- 1227169..1227236 + 68 NuclAT_20 - -
- 1227169..1227236 + 68 NuclAT_20 - -
- 1227169..1227236 + 68 NuclAT_20 - -
- 1227169..1227236 + 68 NuclAT_22 - -
- 1227169..1227236 + 68 NuclAT_22 - -
- 1227169..1227236 + 68 NuclAT_22 - -
- 1227169..1227236 + 68 NuclAT_22 - -
- 1227169..1227236 + 68 NuclAT_24 - -
- 1227169..1227236 + 68 NuclAT_24 - -
- 1227169..1227236 + 68 NuclAT_24 - -
- 1227169..1227236 + 68 NuclAT_24 - -
- 1227169..1227236 + 68 NuclAT_26 - -
- 1227169..1227236 + 68 NuclAT_26 - -
- 1227169..1227236 + 68 NuclAT_26 - -
- 1227169..1227236 + 68 NuclAT_26 - -
FFHJCLDM_RS06010 1227549..1227656 - 108 WP_000170965.1 type I toxin-antitoxin system toxin Ldr family protein -
- 1227704..1227769 + 66 NuclAT_31 - -
- 1227704..1227769 + 66 NuclAT_31 - -
- 1227704..1227769 + 66 NuclAT_31 - -
- 1227704..1227769 + 66 NuclAT_31 - -
- 1227704..1227769 + 66 NuclAT_34 - -
- 1227704..1227769 + 66 NuclAT_34 - -
- 1227704..1227769 + 66 NuclAT_34 - -
- 1227704..1227769 + 66 NuclAT_34 - -
- 1227704..1227769 + 66 NuclAT_37 - -
- 1227704..1227769 + 66 NuclAT_37 - -
- 1227704..1227769 + 66 NuclAT_37 - -
- 1227704..1227769 + 66 NuclAT_37 - -
- 1227704..1227769 + 66 NuclAT_40 - -
- 1227704..1227769 + 66 NuclAT_40 - -
- 1227704..1227769 + 66 NuclAT_40 - -
- 1227704..1227769 + 66 NuclAT_40 - -
- 1227704..1227769 + 66 NuclAT_46 - -
- 1227704..1227769 + 66 NuclAT_46 - -
- 1227704..1227769 + 66 NuclAT_46 - -
- 1227704..1227769 + 66 NuclAT_46 - -
- 1227704..1227769 + 66 NuclAT_49 - -
- 1227704..1227769 + 66 NuclAT_49 - -
- 1227704..1227769 + 66 NuclAT_49 - -
- 1227704..1227769 + 66 NuclAT_49 - -
- 1227704..1227771 + 68 NuclAT_15 - -
- 1227704..1227771 + 68 NuclAT_15 - -
- 1227704..1227771 + 68 NuclAT_15 - -
- 1227704..1227771 + 68 NuclAT_15 - -
- 1227704..1227771 + 68 NuclAT_17 - -
- 1227704..1227771 + 68 NuclAT_17 - -
- 1227704..1227771 + 68 NuclAT_17 - -
- 1227704..1227771 + 68 NuclAT_17 - -
- 1227704..1227771 + 68 NuclAT_19 - -
- 1227704..1227771 + 68 NuclAT_19 - -
- 1227704..1227771 + 68 NuclAT_19 - -
- 1227704..1227771 + 68 NuclAT_19 - -
- 1227704..1227771 + 68 NuclAT_21 - -
- 1227704..1227771 + 68 NuclAT_21 - -
- 1227704..1227771 + 68 NuclAT_21 - -
- 1227704..1227771 + 68 NuclAT_21 - -
- 1227704..1227771 + 68 NuclAT_23 - -
- 1227704..1227771 + 68 NuclAT_23 - -
- 1227704..1227771 + 68 NuclAT_23 - -
- 1227704..1227771 + 68 NuclAT_23 - -
- 1227704..1227771 + 68 NuclAT_25 - -
- 1227704..1227771 + 68 NuclAT_25 - -
- 1227704..1227771 + 68 NuclAT_25 - -
- 1227704..1227771 + 68 NuclAT_25 - -
FFHJCLDM_RS06015 1228061..1229161 - 1101 WP_001295620.1 sodium-potassium/proton antiporter ChaA -
FFHJCLDM_RS06020 1229431..1229661 + 231 WP_001146444.1 putative cation transport regulator ChaB -
FFHJCLDM_RS06025 1229819..1230514 + 696 WP_012775986.1 glutathione-specific gamma-glutamylcyclotransferase -
FFHJCLDM_RS06030 1230558..1230911 - 354 WP_001169669.1 DsrE/F sulfur relay family protein YchN -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Type I toxin-antitoxin system, toxin Ldr

(1-35)


Sequences

Toxin        


Download         Length: 36 a.a.        Molecular weight: 3961.74 Da        Isoelectric Point: 9.1413

>T170002 WP_000170951.1 NZ_CP060121:c1226586-1226479 [Escherichia coli BL21]
MTLAQFAMIFWDDLAAPILAGIITAAIVGWWRNRK

Download         Length: 108 bp

>T170002 NZ_CP076853:2064549-2064839 [Rhizobium sp. WYJ-E13]
ATGCCACAAGTAGTCTTTTCGCCGGCAGCGATCCGCGACCTGCAACGGCTGCGGGATTTGCTGACGCCGAAAAACCCCTC
GGCAGCAAGGCGAGCGGGGGAAACGATCCTCGCAGGTGTCAGAACGCTCTGCCTGCATCCGCATATGGGCCGCCTGATCG
AGGACCTGCCCGAGCAATACCGCGAATGGCTCATCGATTTCGGAGACAGCGGATATGTGGCCCGCTACCGCTTCGATCAG
AACACAGTCACGATCCTTGCGGTGCGGCACCAGAAGGAAGCAATGTTCTGA

Antitoxin


Download         Length: 64 bp

>AT170002 NZ_CP060121:1226636-1226699 [Escherichia coli BL21]
TCTGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTGTACCTCTCAACGTGCGGGGATTTTCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB E3PKK3

Antitoxin

Download structure file

References