Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yafN-yafO (relBE)/YafO-YafN |
Location | 256571..257265 | Replicon | chromosome |
Accession | NZ_CP060121 | ||
Organism | Escherichia coli BL21 |
Toxin (Protein)
Gene name | yafO | Uniprot ID | S1EXB8 |
Locus tag | FFHJCLDM_RS01180 | Protein ID | WP_001263493.1 |
Coordinates | 256867..257265 (+) | Length | 133 a.a. |
Antitoxin (Protein)
Gene name | yafN | Uniprot ID | S1FJN6 |
Locus tag | FFHJCLDM_RS01175 | Protein ID | WP_000554757.1 |
Coordinates | 256571..256864 (+) | Length | 98 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
FFHJCLDM_RS01155 | 252211..252708 | + | 498 | WP_000006260.1 | REP-associated tyrosine transposase RayT | - |
FFHJCLDM_RS01160 | 252924..254663 | - | 1740 | WP_001301256.1 | flagellar biosynthesis protein FlhA | - |
FFHJCLDM_RS01165 | 254608..255393 | + | 786 | WP_000207564.1 | putative lateral flagellar export/assembly protein LafU | - |
FFHJCLDM_RS01170 | 255464..256519 | + | 1056 | WP_001226164.1 | DNA polymerase IV | - |
FFHJCLDM_RS01175 | 256571..256864 | + | 294 | WP_000554757.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin |
FFHJCLDM_RS01180 | 256867..257265 | + | 399 | WP_001263493.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin |
FFHJCLDM_RS01185 | 257275..257727 | + | 453 | WP_001059847.1 | GNAT family N-acetyltransferase | - |
FFHJCLDM_RS01190 | 257973..258176 | + | 204 | Protein_230 | RNA ligase RtcB family protein | - |
FFHJCLDM_RS01195 | 258175..258696 | + | 522 | Protein_231 | peptide chain release factor H | - |
FFHJCLDM_RS01200 | 258753..260210 | - | 1458 | WP_001293003.1 | cytosol nonspecific dipeptidase | - |
FFHJCLDM_RS01205 | 260471..260929 | + | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
FFHJCLDM_RS01210 | 261021..262265 | + | 1245 | WP_000189541.1 | esterase FrsA | - |
- | 261525..261605 | + | 81 | NuclAT_13 | - | - |
- | 261525..261605 | + | 81 | NuclAT_13 | - | - |
- | 261525..261605 | + | 81 | NuclAT_13 | - | - |
- | 261525..261605 | + | 81 | NuclAT_13 | - | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 133 a.a. Molecular weight: 15472.83 Da Isoelectric Point: 8.0949
>T169999 WP_001263493.1 NZ_CP060121:256867-257265 [Escherichia coli BL21]
MRVFKTKLIRLQLTAEELDALTADFISYKRDGVLPDIFGRDALYDDSFTWPLIKFERVAHIHLANVNNPFPPQLRQFSRT
NDEAHLVYCQGAFDEQAWLLIAILKPEPHKQARDNNQMHKIGKMAEAFRMRF
MRVFKTKLIRLQLTAEELDALTADFISYKRDGVLPDIFGRDALYDDSFTWPLIKFERVAHIHLANVNNPFPPQLRQFSRT
NDEAHLVYCQGAFDEQAWLLIAILKPEPHKQARDNNQMHKIGKMAEAFRMRF
Download Length: 399 bp
>T169999 NZ_CP076853:563266-563535 [Rhizobium sp. WYJ-E13]
ATGGCGTGGAGAATTGAGTTTCACCGGGCTGCGGAGCGTGAACTCGAAAAGCTCGGCCGCGACGCTGCCAGCCGCATCCT
TCGCTTTCTGAACGACCGCAATTCAAAGTTGGACGATCCAAGATCGGTCGGAGAGGCGCTGAAGGGCTCCGAGCTGGGAA
ACTTCTGGAAATACCGTGTCGGAGACTATCGCGTAATCGCTGACATCAATGATGGCGCAGTTCGCATTCTGATTGTGCGC
ATCGGCAATCGCCGCGATGTGTATCGATAA
ATGGCGTGGAGAATTGAGTTTCACCGGGCTGCGGAGCGTGAACTCGAAAAGCTCGGCCGCGACGCTGCCAGCCGCATCCT
TCGCTTTCTGAACGACCGCAATTCAAAGTTGGACGATCCAAGATCGGTCGGAGAGGCGCTGAAGGGCTCCGAGCTGGGAA
ACTTCTGGAAATACCGTGTCGGAGACTATCGCGTAATCGCTGACATCAATGATGGCGCAGTTCGCATTCTGATTGTGCGC
ATCGGCAATCGCCGCGATGTGTATCGATAA
Antitoxin
Download Length: 98 a.a. Molecular weight: 11233.81 Da Isoelectric Point: 5.9050
>AT169999 WP_000554757.1 NZ_CP060121:256571-256864 [Escherichia coli BL21]
MHRILAEKSVNITELRKNPAKYFIDQPVAVLSNNRPAGYLLSASAFEALMDMLAEQEEKKPIKARFRPSAARLEEITRRA
EKYLNDMTDDDFNDFKE
MHRILAEKSVNITELRKNPAKYFIDQPVAVLSNNRPAGYLLSASAFEALMDMLAEQEEKKPIKARFRPSAARLEEITRRA
EKYLNDMTDDDFNDFKE
Download Length: 294 bp
>AT169999 NZ_CP076853:563058-563282 [Rhizobium sp. WYJ-E13]
ATGCTCGCTTTAAGATTGCCGCCGGAGATTGAAGCTCGCCTGGATGCGCTTGCAAAGCGCACCGGACGAAGCAAGAGTTT
CTATGCGCGGCAGGCTATTCTTGAACATCTTGACGATATGGAAGACATCTTCCTTGCCGAAAAGCGCCTTGAGGAGCTTC
GTAAGGAAGAAACCGATACTGTGCCGCTCTCGGAACTGATGGCGCGGTATGGCGTGGAGAATTGA
ATGCTCGCTTTAAGATTGCCGCCGGAGATTGAAGCTCGCCTGGATGCGCTTGCAAAGCGCACCGGACGAAGCAAGAGTTT
CTATGCGCGGCAGGCTATTCTTGAACATCTTGACGATATGGAAGACATCTTCCTTGCCGAAAAGCGCCTTGAGGAGCTTC
GTAAGGAAGAAACCGATACTGTGCCGCTCTCGGAACTGATGGCGCGGTATGGCGTGGAGAATTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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