Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) HipBST/HipA(toxin)
Location 4502970..4504321 Replicon chromosome
Accession NZ_CP059962
Organism Pectobacterium brasiliense strain IPO:3710 NAK:380

Toxin (Protein)


Gene name HipT Uniprot ID -
Locus tag H5A25_RS19760 Protein ID WP_119871557.1
Coordinates 4502970..4504010 (-) Length 347 a.a.

Antitoxin (Protein)


Gene name HipS Uniprot ID A0A086EBR8
Locus tag H5A25_RS19765 Protein ID WP_039279922.1
Coordinates 4504007..4504321 (-) Length 105 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H5A25_RS19730 4498065..4499417 + 1353 WP_119871553.1 glutathione-disulfide reductase -
H5A25_RS19735 4499535..4499822 - 288 WP_015842269.1 type II toxin-antitoxin system RelE/ParE family toxin -
H5A25_RS19740 4499819..4500070 - 252 WP_010281712.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
H5A25_RS19745 4500325..4501230 + 906 WP_119871554.1 siderophore-interacting protein -
H5A25_RS19750 4501264..4502019 - 756 WP_119871555.1 thiol:disulfide interchange protein DsbG -
H5A25_RS19755 4502287..4502910 + 624 WP_119871556.1 LysE family translocator -
H5A25_RS19760 4502970..4504010 - 1041 WP_119871557.1 HipA domain-containing protein Toxin
H5A25_RS19765 4504007..4504321 - 315 WP_039279922.1 HipA N-terminal domain-containing protein Antitoxin
H5A25_RS19770 4504306..4504632 - 327 WP_039510297.1 helix-turn-helix domain-containing protein -
H5A25_RS19775 4504819..4505691 - 873 WP_119871558.1 LysR family transcriptional regulator -
H5A25_RS19780 4505791..4506303 + 513 WP_185893742.1 phenolic acid decarboxylase -
H5A25_RS19785 4506360..4507493 - 1134 WP_119871560.1 alkylhydroperoxidase domain protein -
H5A25_RS19790 4507490..4508524 - 1035 WP_119871561.1 putative FMN-dependent luciferase-like monooxygenase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(57-307)

Antitoxin

(5-98)


Sequences


Toxin        


Download         Length: 347 a.a.        Molecular weight: 39677.65 Da        Isoelectric Point: 6.4479

>T169615 WP_119871557.1 NZ_CP059962:c4504010-4502970 [Pectobacterium brasiliense]
MTRCRILLTPLTHEEEIATGYSRKGLKHLAGKMHTSPDLRFTRQQFMHDLPQAQKGMSISGYQPKIQLVLEEQAFTVVDH
QGLYILKHSPIEFPYLAENEHATMTLMARLGFAVPPHGLLRFKPEQADDEPEFAFVIKRFDRDEKTGHPIHQEQLDGAMG
IGEKFGKTHTDGRQYVSYERLALFLSKHVNDNIVFKIDLFRRIAYAYMLGNNDMHLRNFGLMHLRSGQLMLAPIYDFVSV
APYPTYFSSCFMALPLLIQEEGDEALAPGFETAYGEYLGMDFILFGQRIGLSENLTKKLLADLTKEAECVETTYRDSFMP
ADAIETTLRCYRHRLNLMSILDAERI

Download         Length: 1041 bp

>T169615 NZ_CP076645:1086941-1087276 [Escherichia coli]
ATGGTAAGCCGATACGTACCCGATATGGGCGATCTGATTTGGGTTGATTTTGACCCGACAAAAGGTAGCGAGCAAGCTGG
ACATCGTCCAGCTGTTGTCCTGAGTCCTTTCATGTACAACAACAAAACAGGTATGTGTCTGTGTGTTCCTTGTACAACGC
AATCAAAAGGATATCCGTTCGAAGTTGTTTTATCCGGTCAGGAACGTGATGGCGTAGCGTTAGCTGATCAGGTAAAAAGT
ATCGCCTGGCGGGCAAGAGGAGCAACGAAGAAAGGAACAGTTGCCCCAGAGGAATTACAACTCATTAAAGCCAAAATTAA
CGTACTGATTGGGTAG

Antitoxin


Download         Length: 105 a.a.        Molecular weight: 11898.74 Da        Isoelectric Point: 9.8041

>AT169615 WP_039279922.1 NZ_CP059962:c4504321-4504007 [Pectobacterium brasiliense]
MRRQVKVYLYGVHIGQLSQDDKGYLFEYKKSYIGPPLSLSLPIQTGTFRSRTLPPYFASLAPEGWLRRQYSQLQHLDEKD
LFGILIQNGKNLIGAVQLIAEDKA

Download         Length: 315 bp

>AT169615 NZ_CP076645:1086693-1086941 [Escherichia coli]
ATGATCCACAGTAGCGTAAAGCGTTGGGGAAATTCACCGGCGGTGCGGATCCCGGCTACGTTAATGCAGGCGCTCAATCT
GAATATTGATGATGAAGTGAAGATTGACCTGGTGGATGGCAAATTAATTATTGAGCCAGTGCGTAAAGAGCCCGTATTTA
CGCTTGCTGAACTGGTCAACGACATCACGCCGGAAAACCTCCACGAGAATATCGACTGGGGAGAGCCGAAAGATAAGGAA
GTCTGGTAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure
AlphaFold DB A0A086EBR8

References