Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | HipBST/HipA(toxin) |
Location | 4502970..4504321 | Replicon | chromosome |
Accession | NZ_CP059962 | ||
Organism | Pectobacterium brasiliense strain IPO:3710 NAK:380 |
Toxin (Protein)
Gene name | HipT | Uniprot ID | - |
Locus tag | H5A25_RS19760 | Protein ID | WP_119871557.1 |
Coordinates | 4502970..4504010 (-) | Length | 347 a.a. |
Antitoxin (Protein)
Gene name | HipS | Uniprot ID | A0A086EBR8 |
Locus tag | H5A25_RS19765 | Protein ID | WP_039279922.1 |
Coordinates | 4504007..4504321 (-) | Length | 105 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
H5A25_RS19730 | 4498065..4499417 | + | 1353 | WP_119871553.1 | glutathione-disulfide reductase | - |
H5A25_RS19735 | 4499535..4499822 | - | 288 | WP_015842269.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
H5A25_RS19740 | 4499819..4500070 | - | 252 | WP_010281712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
H5A25_RS19745 | 4500325..4501230 | + | 906 | WP_119871554.1 | siderophore-interacting protein | - |
H5A25_RS19750 | 4501264..4502019 | - | 756 | WP_119871555.1 | thiol:disulfide interchange protein DsbG | - |
H5A25_RS19755 | 4502287..4502910 | + | 624 | WP_119871556.1 | LysE family translocator | - |
H5A25_RS19760 | 4502970..4504010 | - | 1041 | WP_119871557.1 | HipA domain-containing protein | Toxin |
H5A25_RS19765 | 4504007..4504321 | - | 315 | WP_039279922.1 | HipA N-terminal domain-containing protein | Antitoxin |
H5A25_RS19770 | 4504306..4504632 | - | 327 | WP_039510297.1 | helix-turn-helix domain-containing protein | - |
H5A25_RS19775 | 4504819..4505691 | - | 873 | WP_119871558.1 | LysR family transcriptional regulator | - |
H5A25_RS19780 | 4505791..4506303 | + | 513 | WP_185893742.1 | phenolic acid decarboxylase | - |
H5A25_RS19785 | 4506360..4507493 | - | 1134 | WP_119871560.1 | alkylhydroperoxidase domain protein | - |
H5A25_RS19790 | 4507490..4508524 | - | 1035 | WP_119871561.1 | putative FMN-dependent luciferase-like monooxygenase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 347 a.a. Molecular weight: 39677.65 Da Isoelectric Point: 6.4479
>T169615 WP_119871557.1 NZ_CP059962:c4504010-4502970 [Pectobacterium brasiliense]
MTRCRILLTPLTHEEEIATGYSRKGLKHLAGKMHTSPDLRFTRQQFMHDLPQAQKGMSISGYQPKIQLVLEEQAFTVVDH
QGLYILKHSPIEFPYLAENEHATMTLMARLGFAVPPHGLLRFKPEQADDEPEFAFVIKRFDRDEKTGHPIHQEQLDGAMG
IGEKFGKTHTDGRQYVSYERLALFLSKHVNDNIVFKIDLFRRIAYAYMLGNNDMHLRNFGLMHLRSGQLMLAPIYDFVSV
APYPTYFSSCFMALPLLIQEEGDEALAPGFETAYGEYLGMDFILFGQRIGLSENLTKKLLADLTKEAECVETTYRDSFMP
ADAIETTLRCYRHRLNLMSILDAERI
MTRCRILLTPLTHEEEIATGYSRKGLKHLAGKMHTSPDLRFTRQQFMHDLPQAQKGMSISGYQPKIQLVLEEQAFTVVDH
QGLYILKHSPIEFPYLAENEHATMTLMARLGFAVPPHGLLRFKPEQADDEPEFAFVIKRFDRDEKTGHPIHQEQLDGAMG
IGEKFGKTHTDGRQYVSYERLALFLSKHVNDNIVFKIDLFRRIAYAYMLGNNDMHLRNFGLMHLRSGQLMLAPIYDFVSV
APYPTYFSSCFMALPLLIQEEGDEALAPGFETAYGEYLGMDFILFGQRIGLSENLTKKLLADLTKEAECVETTYRDSFMP
ADAIETTLRCYRHRLNLMSILDAERI
Download Length: 1041 bp
>T169615 NZ_CP076645:1086941-1087276 [Escherichia coli]
ATGGTAAGCCGATACGTACCCGATATGGGCGATCTGATTTGGGTTGATTTTGACCCGACAAAAGGTAGCGAGCAAGCTGG
ACATCGTCCAGCTGTTGTCCTGAGTCCTTTCATGTACAACAACAAAACAGGTATGTGTCTGTGTGTTCCTTGTACAACGC
AATCAAAAGGATATCCGTTCGAAGTTGTTTTATCCGGTCAGGAACGTGATGGCGTAGCGTTAGCTGATCAGGTAAAAAGT
ATCGCCTGGCGGGCAAGAGGAGCAACGAAGAAAGGAACAGTTGCCCCAGAGGAATTACAACTCATTAAAGCCAAAATTAA
CGTACTGATTGGGTAG
ATGGTAAGCCGATACGTACCCGATATGGGCGATCTGATTTGGGTTGATTTTGACCCGACAAAAGGTAGCGAGCAAGCTGG
ACATCGTCCAGCTGTTGTCCTGAGTCCTTTCATGTACAACAACAAAACAGGTATGTGTCTGTGTGTTCCTTGTACAACGC
AATCAAAAGGATATCCGTTCGAAGTTGTTTTATCCGGTCAGGAACGTGATGGCGTAGCGTTAGCTGATCAGGTAAAAAGT
ATCGCCTGGCGGGCAAGAGGAGCAACGAAGAAAGGAACAGTTGCCCCAGAGGAATTACAACTCATTAAAGCCAAAATTAA
CGTACTGATTGGGTAG
Antitoxin
Download Length: 105 a.a. Molecular weight: 11898.74 Da Isoelectric Point: 9.8041
>AT169615 WP_039279922.1 NZ_CP059962:c4504321-4504007 [Pectobacterium brasiliense]
MRRQVKVYLYGVHIGQLSQDDKGYLFEYKKSYIGPPLSLSLPIQTGTFRSRTLPPYFASLAPEGWLRRQYSQLQHLDEKD
LFGILIQNGKNLIGAVQLIAEDKA
MRRQVKVYLYGVHIGQLSQDDKGYLFEYKKSYIGPPLSLSLPIQTGTFRSRTLPPYFASLAPEGWLRRQYSQLQHLDEKD
LFGILIQNGKNLIGAVQLIAEDKA
Download Length: 315 bp
>AT169615 NZ_CP076645:1086693-1086941 [Escherichia coli]
ATGATCCACAGTAGCGTAAAGCGTTGGGGAAATTCACCGGCGGTGCGGATCCCGGCTACGTTAATGCAGGCGCTCAATCT
GAATATTGATGATGAAGTGAAGATTGACCTGGTGGATGGCAAATTAATTATTGAGCCAGTGCGTAAAGAGCCCGTATTTA
CGCTTGCTGAACTGGTCAACGACATCACGCCGGAAAACCTCCACGAGAATATCGACTGGGGAGAGCCGAAAGATAAGGAA
GTCTGGTAA
ATGATCCACAGTAGCGTAAAGCGTTGGGGAAATTCACCGGCGGTGCGGATCCCGGCTACGTTAATGCAGGCGCTCAATCT
GAATATTGATGATGAAGTGAAGATTGACCTGGTGGATGGCAAATTAATTATTGAGCCAGTGCGTAAAGAGCCCGTATTTA
CGCTTGCTGAACTGGTCAACGACATCACGCCGGAAAACCTCCACGAGAATATCGACTGGGGAGAGCCGAAAGATAAGGAA
GTCTGGTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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