Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-RelB
Location 2109732..2110240 Replicon chromosome
Accession NZ_CP058364
Organism Galbibacter sp. BG1

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag HX109_RS09375 Protein ID WP_178951382.1
Coordinates 2109980..2110240 (+) Length 87 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag HX109_RS09370 Protein ID WP_178951381.1
Coordinates 2109732..2109980 (+) Length 83 a.a.

Genomic Context

HX109_RS09360HX109_RS09365HX109_RS09370HX109_RS09375HX109_RS09385HX109_RS09390HX109_RS09380
Location: 2106294..2106821 (528 bp)
Type: Others
Protein ID: WP_178951379.1
Location: 2107024..2109381 (2358 bp)
Type: Others
Protein ID: WP_178951380.1
Location: 2109732..2109980 (249 bp)
Type: Antitoxin
Protein ID: WP_178951381.1
Location: 2109980..2110240 (261 bp)
Type: Toxin
Protein ID: WP_178951382.1
Location: 2111300..2112556 (1257 bp)
Type: Others
Protein ID: WP_178951384.1
Location: 2112888..2114168 (1281 bp)
Type: Others
Protein ID: WP_178951385.1
Location: 2110286..2110900 (615 bp)
Type: Others
Protein ID: WP_178951383.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
HX109_RS093602106294..2106821+528WP_178951379.1inorganic diphosphatase-
HX109_RS093652107024..2109381+2358WP_178951380.1sodium-translocating pyrophosphatase-
HX109_RS093702109732..2109980+249WP_178951381.1type II toxin-antitoxin system prevent-host-death family antitoxinAntitoxin
HX109_RS093752109980..2110240+261WP_178951382.1Txe/YoeB family addiction module toxinToxin
HX109_RS093802110286..2110900-615WP_178951383.1deoxynucleoside kinase-
HX109_RS093852111300..2112556+1257WP_178951384.1methionine adenosyltransferase-
HX109_RS093902112888..2114168+1281WP_178951385.1O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-72)


Sequences

Toxin        


Download         Length: 87 a.a.        Molecular weight: 10356.02 Da        Isoelectric Point: 10.1790

>T166739 WP_178951382.1 NZ_CP058364:2109980-2110240 [Galbibacter sp. BG1]
MKLIWSITAWNDYLYWQKVDRKTVKRINELVKSCIRTPFEGIGKPEALKGDLQGYWSRRITSEHRLVYKFTNESLWIAAC
RYHYGK

Download         Length: 261 bp

>T166739 NZ_CP074415:2205971-2206267 [Vibrio parahaemolyticus]
ATGCAAAAGAATAAATATAAGCTAAGTAAATTAGCACAGACTCATTTACAAAAAATCAGAAACTATACCGTCAACAATTT
CTCTGAGATGCAATGGCGAAGCTACAAAGATACCTTACTAACAGGGTTTCAAATGCTTGCTGACAACCCGGCTGTTGGTC
GCAGTTGCGATGAGATATACCCAAGTGGTTTTTATTTCCCTGTAGGCAAGCACACCGCTTACTTTACAAAAGAAGATGGC
TTCATTTTAGTTGTTGCTGTACTCGGTCAATCACAACTTCCGCAGAACCACCTGTAA

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9387.67 Da        Isoelectric Point: 4.6437

>AT166739 WP_178951381.1 NZ_CP058364:2109732-2109980 [Galbibacter sp. BG1]
MEVVNYTDFRSNLKHWFDKVINDVSDIVIKRKGGKDLVLISLDEYNSLKETTYLLTGKNRDVLLNSIKELEAGDGIEKDL
AE

Download         Length: 249 bp

>AT166739 NZ_CP074415:2205722-2205964 [Vibrio parahaemolyticus]
ATGCACACATTAACAGCAAATGATGCCAAACGTAATTTTGGTGAGTTACTTCTGAGCGCTCAACGTGAGCCAGTGAAAAT
TAGCAAAAATAGCAAAGATGCCGTAGTTGTTATGTCGATTAAAGACTATGAAGAGCTGGAGGCAATGAAAACTGATTACC
TGAGACATTGTTTCGAGTCAGCGAAGCAAGACTTGGCACAAGGCAATGTAGTTAATGGTGAAGACTTTTTAAACGCCTTA
TAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References