Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 611809..612608 Replicon chromosome
Accession NZ_CP056961
Organism Escherichia fergusonii strain RHB41-C20

Toxin (Protein)


Gene name yhaV Uniprot ID F0JQM9
Locus tag HV012_RS02965 Protein ID WP_000347270.1
Coordinates 611809..612273 (-) Length 155 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID -
Locus tag HV012_RS02970 Protein ID WP_181588313.1
Coordinates 612273..612608 (-) Length 112 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HV012_RS02935 606810..607244 - 435 WP_181588311.1 PTS sugar transporter subunit IIA -
HV012_RS02940 607262..608140 - 879 WP_001295548.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
HV012_RS02945 608130..608909 - 780 WP_000406214.1 PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC -
HV012_RS02950 608920..609393 - 474 WP_032303829.1 PTS N-acetylgalactosamine transporter subunit IIB -
HV012_RS02955 609416..610696 - 1281 WP_181588312.1 tagatose-bisphosphate aldolase subunit KbaZ -
HV012_RS02960 610945..611754 + 810 WP_000072187.1 aga operon transcriptional regulator AgaR -
HV012_RS02965 611809..612273 - 465 WP_000347270.1 type II toxin-antitoxin system ribonuclease toxin YhaV Toxin
HV012_RS02970 612273..612608 - 336 WP_181588313.1 type II toxin-antitoxin system antitoxin PrlF Antitoxin
HV012_RS02975 612757..614328 - 1572 WP_181588314.1 galactarate dehydratase -
HV012_RS02980 614799..615569 + 771 WP_001058567.1 2-dehydro-3-deoxyglucarate aldolase -
HV012_RS02985 615594..616484 + 891 WP_000178100.1 2-hydroxy-3-oxopropionate reductase -
HV012_RS02995 617139..617507 - 369 WP_181588315.1 hypothetical protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(12-150)

Antitoxin

(14-110)


Sequences


Toxin        


Download         Length: 155 a.a.        Molecular weight: 17806.22 Da        Isoelectric Point: 9.6924

>T164568 WP_000347270.1 NZ_CP056961:c612273-611809 [Escherichia fergusonii]
MDFPQRVNGWALYAHPCFQETYDALVAEVETLKGKDPENYQRKAATKLLAVVHKVIEEHITVNPSSPAFRHGKSLGSGKN
KDWSRVKFGAGRYRLFFRYSEKEKVIILGWMNDENTLRTYGKKTDAYTVFSKMLKRGHPPADWETLTRETEEAH

Download         Length: 465 bp

>T164568 NZ_CP072986:848176-848583 [Escherichia coli]
GTGGTCCTGTGGCAATCTGATTTGCGCGTCTCCTGGCGCGCACAGTGGCTTTCCTTGCTGATTCATGGGCTGGTTGCCGC
TGTTATTTTACTCATGCCCTGGCCACTCAGTTACACCCCGTTATGGATGGTGTTACTTTCGCTGGTGGTGTTTGATTGCG
TTCGCAGCCAGCGGCGTATTAATGCTCGCCAGGGGGAAATTCGCTTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGAGCATCGTCAAAGCACCGTGGATGATTAAGAGCGGCATGATGCTGCGTTTACGTTCTGATGGCGGTAAACGGCA
ACATTTATGGCTGGCAGCCGACAGCATGGACGAAGCTGAATGGCGGGATTTACGGCGGATTTTGTTGCAACAAGAGACGC
AAAGATAA

Antitoxin


Download         Length: 112 a.a.        Molecular weight: 12282.88 Da        Isoelectric Point: 4.3398

>AT164568 WP_181588313.1 NZ_CP056961:c612608-612273 [Escherichia fergusonii]
MPANARSNAVLTTESKVTIRGQTTIPAPVREALKLKPGLDSIHYEILPGGQVFMCRLGDEEEDPTMNAFLRFLDADIQNN
PQKTRPFDIQQGKKLVAGMDVNIDDEIGDDE

Download         Length: 336 bp

>AT164568 NZ_CP072986:847929-848195 [Escherichia coli]
ATGGACATTAACAACAAAGCCCGCATTCATTGGGCATGCCGCCGTGGTATGCGCGAACTCGATATTTCAATCATGCCGTT
TTTCGAACATGAGTACGACAGCTTAAGCGATGACGAAAAACGCATCTTTATTCGTCTGCTGGAATGTGACGATCCGGACC
TGTTTAACTGGCTGATGAATCACGGTAAACCGGCCGATGCAGAACTGGAAATGATGGTCCGACTCATCCAGACACGGAAC
CGGGAACGTGGTCCTGTGGCAATCTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB A0A0V9NQ90


Antitoxin

Source ID Structure

References