Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/COG4683-HTH_37
Location 579113..579807 Replicon chromosome
Accession NZ_CP054619
Organism Azospirillum oryzae strain KACC 14407

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag HUE56_RS11735 Protein ID WP_149197840.1
Coordinates 579448..579807 (-) Length 120 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag HUE56_RS11730 Protein ID WP_149197839.1
Coordinates 579113..579451 (-) Length 113 a.a.

Genomic Context

HUE56_RS11725HUE56_RS11740HUE56_RS11730HUE56_RS11735HUE56_RS11745HUE56_RS11750HUE56_RS11755HUE56_RS11760HUE56_RS11765
Location: 576268..578961 (2694 bp)
Type: Others
Protein ID: WP_149197838.1
Location: 579880..580026 (147 bp)
Type: Others
Protein ID: WP_211101041.1
Location: 579113..579451 (339 bp)
Type: Antitoxin
Protein ID: WP_149197839.1
Location: 579448..579807 (360 bp)
Type: Toxin
Protein ID: WP_149197840.1
Location: 580401..580670 (270 bp)
Type: Others
Protein ID: WP_149197841.1
Location: 580661..580834 (174 bp)
Type: Others
Protein ID: WP_149197842.1
Location: 581128..582288 (1161 bp)
Type: Others
Protein ID: WP_174757212.1
Location: 582367..583065 (699 bp)
Type: Others
Protein ID: WP_149197844.1
Location: 583338..583703 (366 bp)
Type: Others
Protein ID: WP_149197845.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
HUE56_RS11725576268..578961+2694WP_149197838.1pyruvate, phosphate dikinase-
HUE56_RS11730579113..579451-339WP_149197839.1XRE family transcriptional regulatorAntitoxin
HUE56_RS11735579448..579807-360WP_149197840.1type II toxin-antitoxin system RelE/ParE family toxinToxin
HUE56_RS11740579880..580026+147WP_211101041.1hypothetical protein-
HUE56_RS11745580401..580670-270WP_149197841.1type II toxin-antitoxin system RelE/ParE family toxin-
HUE56_RS11750580661..580834-174WP_149197842.1antitoxin-
HUE56_RS11755581128..582288-1161WP_174757212.1XRE family transcriptional regulator-
HUE56_RS11760582367..583065-699WP_149197844.1hypothetical protein-
HUE56_RS11765583338..583703-366WP_149197845.1MarR family transcriptional regulator-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(13-107)

Antitoxin

Cro/C1-type helix-turn-helix domain

(36-87)


Sequences

Toxin        


Download         Length: 120 a.a.        Molecular weight: 12982.84 Da        Isoelectric Point: 10.6473

>T159979 WP_149197840.1 NZ_CP054619:c579807-579448 [Azospirillum oryzae]
MHTVLFHTAFAAEFRALPHAVRIDLAAAAKVLGERGPALGRPHVDTLNGSRHANMKELRFKSNGGVWRVAFAFDPKRNAV
VLVAGDKSGVSEKRFYASLIATADSRYDDHLSDLKGTKP

Download         Length: 360 bp

>T159979 NZ_CP070229:3196754-3196861 [Escherichia coli]
ATGACGCTCGCAGAACTGGGCATGGCCTTCTGGCATGATTTAGCGGCTCCGGTCATTGCTGGCATTCTTGCCAGTATGAT
CGTGAACTGGCTGAATAAGCGGAAGTAA

Antitoxin


Download         Length: 113 a.a.        Molecular weight: 12155.83 Da        Isoelectric Point: 4.7147

>AT159979 WP_149197839.1 NZ_CP054619:c579451-579113 [Azospirillum oryzae]
MTATIPFDQILSEMTDDERAAVDARAAGMLAEIDGLAELRRLAELTQGQVAETLNVKQPTVHQIEKRTDLYLSTLRRFVE
AAGGELELRVSLPGKGAFKLTGIGELTSGSQR

Download         Length: 339 bp

>AT159979 NZ_CP070229:c3196706-3196640 [Escherichia coli]
GGTCTAGGTTCAAGATTAGCCCCCGTGATGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCT

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References