Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 600701..601500 Replicon chromosome
Accession NZ_CP051706
Organism Escherichia coli strain SCU-124

Toxin (Protein)


Gene name yhaV Uniprot ID S1NYM6
Locus tag HHJ37_RS02920 Protein ID WP_000347251.1
Coordinates 600701..601165 (-) Length 155 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID S1PPV5
Locus tag HHJ37_RS02925 Protein ID WP_001296435.1
Coordinates 601165..601500 (-) Length 112 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HHJ37_RS02890 595702..596136 - 435 WP_000948837.1 PTS sugar transporter subunit IIA -
HHJ37_RS02895 596154..597032 - 879 WP_001525735.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
HHJ37_RS02900 597022..597801 - 780 WP_000406214.1 PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC -
HHJ37_RS02905 597812..598285 - 474 WP_001295547.1 PTS N-acetylgalactosamine transporter subunit IIB -
HHJ37_RS02910 598308..599588 - 1281 WP_000681950.1 tagatose-bisphosphate aldolase subunit KbaZ -
HHJ37_RS02915 599837..600646 + 810 WP_000072187.1 aga operon transcriptional regulator AgaR -
HHJ37_RS02920 600701..601165 - 465 WP_000347251.1 type II toxin-antitoxin system ribonuclease toxin YhaV Toxin
HHJ37_RS02925 601165..601500 - 336 WP_001296435.1 type II toxin-antitoxin system antitoxin PrlF Antitoxin
HHJ37_RS02930 601649..603220 - 1572 WP_001525733.1 galactarate dehydratase -
HHJ37_RS02935 603595..604929 + 1335 WP_000979025.1 galactarate/glucarate/glycerate transporter GarP -
HHJ37_RS02940 604945..605715 + 771 WP_001058227.1 2-dehydro-3-deoxyglucarate aldolase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin endonuclease, YhaV

(12-150)

Antitoxin

PrlF antitoxin

(14-110)


Sequences

Toxin        


Download         Length: 155 a.a.        Molecular weight: 17777.14 Da        Isoelectric Point: 9.4947

>T154895 WP_000347251.1 NZ_CP051706:c601165-600701 [Escherichia coli]
MDFPQRVNGWALYAHPCFQETYDALVAEVEALKGKDPENYQRKAATKLLAVVHKVIEEHITVNPSSPAFRHGKSLGSGKN
KDWSRVKFGAGRYRLFFRYSEKEKVIILGWMNDENTLRTYGKKTDAYTVFSKMLKRGHPPADWESLTQETEENH

Download         Length: 465 bp

>T154895 NZ_CP068390:c2322922-2322755 [Pseudomonas chlororaphis subsp. aurantiaca]
TTGATCAAGGAGCTTGAAGCCGCAGGCTGGGTGCTGGAGCGCGTTACCGGCAGCCATCATCTGTTCACGCATCCCTACCG
GCCCGAGACCGTTCCGGTGCCTCACCCGAAGAAGGATCTGCCACGGGGGACGGTCAGGGCCATCCAGAAACTGGCCGGGC
TGATATAG

Antitoxin


Download         Length: 112 a.a.        Molecular weight: 12321.92 Da        Isoelectric Point: 4.5392

>AT154895 WP_001296435.1 NZ_CP051706:c601500-601165 [Escherichia coli]
MPANARSNAVLTTESKVTIRGQTTIPAPVREALKLKPGLDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNN
PQKTRPFDIQQGKKLVAGMDVNIDDEIGDDE

Download         Length: 336 bp

>AT154895 NZ_CP068390:c2322719-2322318 [Pseudomonas chlororaphis subsp. aurantiaca]
GTGCAATATCCCATCTGCATCGAGTGGGGCGACGAGCACACTGCTACCGGCATCCAGATTCCTGACATTCCTGGCGCGGT
CACCGCCGGCGACACCTTCGAGGCCGCGTACAGCGCCGCCATCGAGATCGCCCACGTCATGCTCGAAGAACTGGCCCGCG
AGGGACAAGCCATTCCCCTGCCCTCGCCCACCGGCACGCACCGCGCCAACCCCGATTTCGAGGGCATGGGCTGGGGCATG
CTGGATATCGATATCACGCCTTACCTGGGCAAGACCGAGAAGGTCAATGTGACCCTGCCGGGCTACGTGATTCAACGAAT
CGACCGTTTTGTGCGCGAGCACAACATCAAGAGCCGGTCGTCTTTCCTGGCGGATGCGGCGATGGAAAAGCTGGGGCGTT
AA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829CJ20

Antitoxin

Source ID Structure
AlphaFold DB S1PPV5

References