Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/HigB-HTH_XRE |
Location | 1263634..1264313 | Replicon | chromosome |
Accession | NZ_CP051688 | ||
Organism | Escherichia coli strain SCU-387 |
Toxin (Protein)
Gene name | higB | Uniprot ID | S1PK60 |
Locus tag | HHJ48_RS05950 | Protein ID | WP_000057523.1 |
Coordinates | 1263634..1263936 (+) | Length | 101 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | S1QAY3 |
Locus tag | HHJ48_RS05955 | Protein ID | WP_000806442.1 |
Coordinates | 1263972..1264313 (+) | Length | 114 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
HHJ48_RS05930 | 1258897..1260117 | - | 1221 | Protein_1159 | fosmidomycin MFS transporter | - |
HHJ48_RS05935 | 1260335..1261987 | + | 1653 | WP_000771748.1 | bifunctional UDP-sugar hydrolase/5'-nucleotidase | - |
HHJ48_RS05940 | 1262024..1262503 | - | 480 | WP_001538397.1 | Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK | - |
HHJ48_RS05945 | 1262707..1263501 | - | 795 | WP_001538398.1 | TraB/GumN family protein | - |
HHJ48_RS05950 | 1263634..1263936 | + | 303 | WP_000057523.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
HHJ48_RS05955 | 1263972..1264313 | + | 342 | WP_000806442.1 | HigA family addiction module antidote protein | Antitoxin |
HHJ48_RS05960 | 1264371..1266875 | - | 2505 | WP_000083948.1 | copper-exporting P-type ATPase CopA | - |
HHJ48_RS05965 | 1267137..1268069 | + | 933 | WP_001538399.1 | glutaminase A | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11809.44 Da Isoelectric Point: 10.3980
>T154764 WP_000057523.1 NZ_CP051688:1263634-1263936 [Escherichia coli]
MAQKKNIRSFRDAWLADFFVHSTPHRKIPAEIHTTLSRKLDIINAATSHRDLRSPPGNRYEELSGKLQEYSSIRVNKQYR
LIFKWVNGKAEELFLDPHNY
MAQKKNIRSFRDAWLADFFVHSTPHRKIPAEIHTTLSRKLDIINAATSHRDLRSPPGNRYEELSGKLQEYSSIRVNKQYR
LIFKWVNGKAEELFLDPHNY
Download Length: 303 bp
>T154764 NZ_CP068278:c923846-923442 [Corynebacterium aquatimens]
GTGATCGCGCTGGACACCAGCCTGGCCGTTCCGCTTCTGTTGGGCACGCATAATGCCCACGAATCGGTGAAGAGGTGGGC
GAAGGGACGGGAGCTGACGCTGTGCGCGCACTCCTTGGTTGAGACGTACTCGGTGCTGACGAGGTTGCCGGGAGATAACC
GTTTGGCGGGCAGTGACGCGGTCCAGGTCATCGATGACAATTTTCCCAAGCCGTTGATGTTGCCAGACACGGTCGGCGAA
GATATCCATCGGAGGCTAGCTAAGGCTGGAGTCCTTGGCGGGGCTACTTACGACGGTATCGTCGCGCTGACGGCGCTAGA
AAACGGTGTGCCCCTCGCAAGCAGGGATCGGCGTGCCGTGAATAACTATCTGTCTCTGGGGGTCGAGGTACAACTGGTTA
ACTAG
GTGATCGCGCTGGACACCAGCCTGGCCGTTCCGCTTCTGTTGGGCACGCATAATGCCCACGAATCGGTGAAGAGGTGGGC
GAAGGGACGGGAGCTGACGCTGTGCGCGCACTCCTTGGTTGAGACGTACTCGGTGCTGACGAGGTTGCCGGGAGATAACC
GTTTGGCGGGCAGTGACGCGGTCCAGGTCATCGATGACAATTTTCCCAAGCCGTTGATGTTGCCAGACACGGTCGGCGAA
GATATCCATCGGAGGCTAGCTAAGGCTGGAGTCCTTGGCGGGGCTACTTACGACGGTATCGTCGCGCTGACGGCGCTAGA
AAACGGTGTGCCCCTCGCAAGCAGGGATCGGCGTGCCGTGAATAACTATCTGTCTCTGGGGGTCGAGGTACAACTGGTTA
ACTAG
Antitoxin
Download Length: 114 a.a. Molecular weight: 13171.10 Da Isoelectric Point: 5.7790
>AT154764 WP_000806442.1 NZ_CP051688:1263972-1264313 [Escherichia coli]
MKQATRKPTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFWLNLQAAVDLW
EVENNMRTQEELGRIETVAEYLARREERAKKVA
MKQATRKPTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFWLNLQAAVDLW
EVENNMRTQEELGRIETVAEYLARREERAKKVA
Download Length: 342 bp
>AT154764 NZ_CP068278:c924091-923852 [Corynebacterium aquatimens]
ATGCAAGCGAAGATTGATGCGGGTGGGAGGTTGCTGCTCCCTAAAGCTCTGCGGGATGCGCTCGGGCTTACCCCCGGCTC
CGTAGTGGACATCAGTGCCTACGGCGGGGGCCTCACAGTCATTCCAGGAGGCAGGACTGCGCGTGTGGAGAGGAACGAAG
ACGGGTTCCTCGTCGCGTACGGTTCAACGGAAGTGACTGACGCCGATGTCTTCGCGCTCATTGACGCGGGAAGAAAGTAG
ATGCAAGCGAAGATTGATGCGGGTGGGAGGTTGCTGCTCCCTAAAGCTCTGCGGGATGCGCTCGGGCTTACCCCCGGCTC
CGTAGTGGACATCAGTGCCTACGGCGGGGGCCTCACAGTCATTCCAGGAGGCAGGACTGCGCGTGTGGAGAGGAACGAAG
ACGGGTTCCTCGTCGCGTACGGTTCAACGGAAGTGACTGACGCCGATGTCTTCGCGCTCATTGACGCGGGAAGAAAGTAG
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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