Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/COG4683-HTH_37 |
| Location | 176038..176695 | Replicon | plasmid p22437-1 |
| Accession | NZ_CP051397 | ||
| Organism | Salmonella enterica subsp. enterica serovar Uganda strain CVM 22437 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | U3PDC3 |
| Locus tag | HFQ89_RS24540 | Protein ID | WP_000270043.1 |
| Coordinates | 176038..176388 (+) | Length | 117 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | HFQ89_RS24545 | Protein ID | WP_000124640.1 |
| Coordinates | 176393..176695 (+) | Length | 101 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HFQ89_RS24495 | 171349..171528 | + | 180 | Protein_190 | helix-turn-helix transcriptional regulator | - |
| HFQ89_RS24500 | 171593..172297 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HFQ89_RS24505 | 172512..173009 | - | 498 | WP_000062185.1 | hypothetical protein | - |
| HFQ89_RS24510 | 173012..173500 | - | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
| HFQ89_RS24515 | 173597..173932 | + | 336 | WP_000683476.1 | hypothetical protein | - |
| HFQ89_RS24520 | 173947..174417 | - | 471 | WP_001281821.1 | hypothetical protein | - |
| HFQ89_RS24525 | 174410..174781 | - | 372 | WP_000516916.1 | hypothetical protein | - |
| HFQ89_RS24530 | 174792..174986 | - | 195 | WP_000343597.1 | hypothetical protein | - |
| HFQ89_RS24535 | 175327..175875 | - | 549 | WP_001061574.1 | transcriptional regulator | - |
| HFQ89_RS24540 | 176038..176388 | + | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| HFQ89_RS24545 | 176393..176695 | + | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin |
| HFQ89_RS24550 | 176722..177015 | - | 294 | WP_001239997.1 | chromosome segregation protein ParM | - |
| HFQ89_RS24555 | 177103..177375 | - | 273 | WP_001043047.1 | HU family DNA-binding protein | - |
| HFQ89_RS24560 | 177433..177960 | - | 528 | WP_001236377.1 | thermonuclease family protein | - |
| HFQ89_RS24565 | 178191..179048 | - | 858 | WP_001167032.1 | hypothetical protein | - |
| HFQ89_RS24570 | 179035..179265 | - | 231 | WP_000972663.1 | hypothetical protein | - |
| HFQ89_RS24575 | 179265..179783 | - | 519 | WP_000210756.1 | nitrite reductase | - |
| HFQ89_RS24580 | 179780..180226 | - | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
| HFQ89_RS24585 | 180226..180585 | - | 360 | WP_000422768.1 | hypothetical protein | - |
| HFQ89_RS24590 | 180642..181070 | - | 429 | WP_000591074.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | - | - | 1..191208 | 191208 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 117 a.a. Molecular weight: 15014.38 Da Isoelectric Point: 12.8644
>T154045 WP_000270043.1 NZ_CP051397:176038-176388 [Salmonella enterica subsp. enterica serovar Uganda]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
Download Length: 351 bp
>T154045 NZ_CP067307:c300065-299688 [Escherichia coli]
ATGAATACATTACCCGACACTCACGTACGGGAGGCATCGGGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAC
CCGACTGCTGGACCAGCACTATGGCCTCACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGGATTTCACTGTGTGACGCGGTGAACTTTCTCGTTGAAAAATACGCGCTGGTACGTACCGACCAGCCGGGATTC
AGCGCAGGAGCCCCGTCGCAGTTAATCAACAGCATTGATATTCTCCGGGCTCGCAGGGCAACCGGCCTGATGACCCGGAA
CAATTACAGAATGGTAAATAACATTACCCAGGGCAAGCATCCGGAGGCAAAACAATGA
ATGAATACATTACCCGACACTCACGTACGGGAGGCATCGGGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAC
CCGACTGCTGGACCAGCACTATGGCCTCACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGGATTTCACTGTGTGACGCGGTGAACTTTCTCGTTGAAAAATACGCGCTGGTACGTACCGACCAGCCGGGATTC
AGCGCAGGAGCCCCGTCGCAGTTAATCAACAGCATTGATATTCTCCGGGCTCGCAGGGCAACCGGCCTGATGACCCGGAA
CAATTACAGAATGGTAAATAACATTACCCAGGGCAAGCATCCGGAGGCAAAACAATGA
Antitoxin
Download Length: 101 a.a. Molecular weight: 12963.60 Da Isoelectric Point: 12.8000
>AT154045 WP_000124640.1 NZ_CP051397:176393-176695 [Salmonella enterica subsp. enterica serovar Uganda]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKKKKKKKKK
Download Length: 303 bp
>AT154045 NZ_CP067307:c300489-300112 [Escherichia coli]
GTGTCAGACACACTGCCCGGGACAACGCATCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGTGCCGGTATCAGAGGCCGGT
TCAGCGACGCGGATGCATACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCATCACACTGTATGCGAAAGGGCTGACCTGCGAAGCCGATACCCTTGGCAGTTG
TGGTTACGTTTATCTGGCTGTTTATCCGACACCGGCAGCGCCCGCAATCACCGTATAA
GTGTCAGACACACTGCCCGGGACAACGCATCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGTGCCGGTATCAGAGGCCGGT
TCAGCGACGCGGATGCATACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCATCACACTGTATGCGAAAGGGCTGACCTGCGAAGCCGATACCCTTGGCAGTTG
TGGTTACGTTTATCTGGCTGTTTATCCGACACCGGCAGCGCCCGCAATCACCGTATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|