Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
| Location | 2465471..2465988 | Replicon | chromosome |
| Accession | NZ_CP051191 | ||
| Organism | Staphylococcus aureus strain NGA102 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | T1YC79 |
| Locus tag | HF084_RS12190 | Protein ID | WP_000113262.1 |
| Coordinates | 2465722..2465988 (+) | Length | 89 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | T1YB60 |
| Locus tag | HF084_RS12185 | Protein ID | WP_000584499.1 |
| Coordinates | 2465471..2465722 (+) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HF084_RS12155 (2461169) | 2461169..2461888 | + | 720 | WP_000479576.1 | amino acid ABC transporter permease | - |
| HF084_RS12160 (2461885) | 2461885..2462616 | + | 732 | WP_000615461.1 | amino acid ABC transporter ATP-binding protein | - |
| HF084_RS12165 (2462713) | 2462713..2463963 | - | 1251 | WP_001012222.1 | FemA/FemB family glycyltransferase FmhA | - |
| HF084_RS12170 (2464218) | 2464218..2464580 | + | 363 | WP_000819840.1 | DUF4467 domain-containing protein | - |
| HF084_RS12175 (2464599) | 2464599..2465198 | + | 600 | WP_000162810.1 | DsbA family protein | - |
| HF084_RS12180 (2465226) | 2465226..2465306 | + | 81 | WP_223197974.1 | hypothetical protein | - |
| HF084_RS12185 (2465471) | 2465471..2465722 | + | 252 | WP_000584499.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| HF084_RS12190 (2465722) | 2465722..2465988 | + | 267 | WP_000113262.1 | Txe/YoeB family addiction module toxin | Toxin |
| HF084_RS12195 (2466023) | 2466023..2466094 | + | 72 | Protein_2374 | hypothetical protein | - |
| HF084_RS12200 (2466283) | 2466283..2467836 | + | 1554 | WP_000727769.1 | zinc ABC transporter substrate-binding lipoprotein AdcA | - |
| HF084_RS12205 (2468022) | 2468022..2468489 | + | 468 | WP_000153344.1 | SRPBCC domain-containing protein | - |
| HF084_RS12210 (2468573) | 2468573..2468758 | + | 186 | WP_000230293.1 | hypothetical protein | - |
| HF084_RS12215 (2468974) | 2468974..2469798 | + | 825 | WP_000594629.1 | formate/nitrite transporter family protein | - |
| HF084_RS12220 (2470032) | 2470032..2470568 | + | 537 | WP_000169317.1 | GNAT family N-acetyltransferase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10437.95 Da Isoelectric Point: 9.9143
>T153745 WP_000113262.1 NZ_CP051191:2465722-2465988 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
Download Length: 267 bp
>T153745 NZ_CP067069:250838-251188 [Bacillus sp. HNR-4]
TTGATTGTAAAACGCGGCGACGTGTATTTTGCAGACCTTTCCCCAGTTGTTGGTTCTGAGCAAGGAGGCGTTCGTCCGGT
TCTTGTCATTCAAAATGACATCGGAAATCGTTTTAGTCCAACGGTGATTGTAGCGGCTATTACTGCACAGATTCAAAAAG
CGAAATTACCCACTCATGTGGAAATTGATGCGAAAAAGTACGGTTTTGAGAGAGATTCTGTTATTTTACTTGAGCAGATT
CGAACAATCGATAAGCAGCGCTTAACGGACAAAATCACTCACTTAGATGAAGTGATGATGATTCGTGTAGATGAAGCGCT
ACAAATTAGTTTAGGACTAATAGATTTTTAA
TTGATTGTAAAACGCGGCGACGTGTATTTTGCAGACCTTTCCCCAGTTGTTGGTTCTGAGCAAGGAGGCGTTCGTCCGGT
TCTTGTCATTCAAAATGACATCGGAAATCGTTTTAGTCCAACGGTGATTGTAGCGGCTATTACTGCACAGATTCAAAAAG
CGAAATTACCCACTCATGTGGAAATTGATGCGAAAAAGTACGGTTTTGAGAGAGATTCTGTTATTTTACTTGAGCAGATT
CGAACAATCGATAAGCAGCGCTTAACGGACAAAATCACTCACTTAGATGAAGTGATGATGATTCGTGTAGATGAAGCGCT
ACAAATTAGTTTAGGACTAATAGATTTTTAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9433.60 Da Isoelectric Point: 4.3407
>AT153745 WP_000584499.1 NZ_CP051191:2465471-2465722 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
Download Length: 252 bp
>AT153745 NZ_CP067069:250546-250833 [Bacillus sp. HNR-4]
GTGTCCGAATCAAGTGTAACTACTGAAATCGTGGTTCGGTTGCCAAAGCAAATGGTAACGGAATTGGACGGAATTGGAAA
ACAAGAGAATAAGAATCGCCATGAACTAATTTGCCAGGCAACACAACTGTTATTGCGTCAACATAAGACGAAGAAACGCT
ACCAACATGAATCAATGCGACGTGGGTACATTGAAATGGGAAAAATTAATCTTGGTATTGCATCTGAAGCTTTCTTAGCA
GAGTATGAAGCAGCTCATACAGTAGAACGCTTAGTTAGCGGGGGGTAA
GTGTCCGAATCAAGTGTAACTACTGAAATCGTGGTTCGGTTGCCAAAGCAAATGGTAACGGAATTGGACGGAATTGGAAA
ACAAGAGAATAAGAATCGCCATGAACTAATTTGCCAGGCAACACAACTGTTATTGCGTCAACATAAGACGAAGAAACGCT
ACCAACATGAATCAATGCGACGTGGGTACATTGAAATGGGAAAAATTAATCTTGGTATTGCATCTGAAGCTTTCTTAGCA
GAGTATGAAGCAGCTCATACAGTAGAACGCTTAGTTAGCGGGGGGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|