Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/HigB-HigA |
Location | 4739488..4740077 | Replicon | chromosome |
Accession | NZ_CP050849 | ||
Organism | Xanthomonas oryzae pv. oryzicola strain GX2019 |
Toxin (Protein)
Gene name | graT | Uniprot ID | A0A0C5V8F2 |
Locus tag | HED68_RS21575 | Protein ID | WP_024712137.1 |
Coordinates | 4739488..4739769 (+) | Length | 94 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | - |
Locus tag | HED68_RS21580 | Protein ID | WP_011260746.1 |
Coordinates | 4739787..4740077 (+) | Length | 97 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
HED68_RS21570 (HED68_21530) | 4737132..4739393 | + | 2262 | WP_024712136.1 | exodeoxyribonuclease V subunit alpha | - |
HED68_RS21575 (HED68_21535) | 4739488..4739769 | + | 282 | WP_024712137.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
HED68_RS21580 (HED68_21540) | 4739787..4740077 | + | 291 | WP_011260746.1 | HigA family addiction module antitoxin | Antitoxin |
HED68_RS21585 (HED68_21545) | 4741015..4742409 | + | 1395 | WP_149621925.1 | type III secretion system effector XopQ | - |
HED68_RS21590 | 4742512..4742699 | - | 188 | Protein_4095 | hypothetical protein | - |
HED68_RS21595 (HED68_21550) | 4742860..4743192 | - | 333 | WP_011260743.1 | hypothetical protein | - |
HED68_RS21600 (HED68_21555) | 4743447..4743752 | + | 306 | WP_224229802.1 | hypothetical protein | - |
HED68_RS21605 (HED68_21560) | 4743902..4744324 | + | 423 | WP_044751863.1 | PAAR domain-containing protein | - |
HED68_RS21610 (HED68_21565) | 4744327..4744803 | + | 477 | WP_024712141.1 | DUF4123 domain-containing protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 11125.91 Da Isoelectric Point: 10.5318
>T153339 WP_024712137.1 NZ_CP050849:4739488-4739769 [Xanthomonas oryzae pv. oryzicola]
MIRSFIDKDAEKIWLGERSRRLPADIQLVARRKLRMLNAAAHLDDLRIPPANRLEALKGQRRGQYNIRINDQWRICFRWM
EGDVVQVEIVDYH
MIRSFIDKDAEKIWLGERSRRLPADIQLVARRKLRMLNAAAHLDDLRIPPANRLEALKGQRRGQYNIRINDQWRICFRWM
EGDVVQVEIVDYH
Download Length: 282 bp
>T153339 NZ_CP066851:c1486507-1486289 [Salmonella enterica subsp. enterica serovar Heidelberg]
ATGTCTGATAAACCATTAACTAAAACTGATTATTTGATGCGTTTACGGCGCTGTCAGACAATTGACACTCTGGAGCGCGT
CATTGAGAAAAATAAATATGAATTGTCCGACAATGAGCTGGCTGTATTTTACTCAGCTGCGGATCACCGTCTTGCAGAAT
TGACGATGAACAAACTCTACGACAAGATCCCCTCTTCAGTATGGAAATTCATTCGTTAA
ATGTCTGATAAACCATTAACTAAAACTGATTATTTGATGCGTTTACGGCGCTGTCAGACAATTGACACTCTGGAGCGCGT
CATTGAGAAAAATAAATATGAATTGTCCGACAATGAGCTGGCTGTATTTTACTCAGCTGCGGATCACCGTCTTGCAGAAT
TGACGATGAACAAACTCTACGACAAGATCCCCTCTTCAGTATGGAAATTCATTCGTTAA
Antitoxin
Download Length: 97 a.a. Molecular weight: 10420.07 Da Isoelectric Point: 7.2040
>AT153339 WP_011260746.1 NZ_CP050849:4739787-4740077 [Xanthomonas oryzae pv. oryzicola]
MTVLPNIHPGDILLEEFLEPLGISQNALARATGVPPRRINEIVLGKRGITADTAVRLAAALGTSERFWLGLQADYELEQA
HRALGDLPARIKRLAA
MTVLPNIHPGDILLEEFLEPLGISQNALARATGVPPRRINEIVLGKRGITADTAVRLAAALGTSERFWLGLQADYELEQA
HRALGDLPARIKRLAA
Download Length: 291 bp
>AT153339 NZ_CP066851:c1486909-1486535 [Salmonella enterica subsp. enterica serovar Heidelberg]
ATGGACGAATACTCACCCAAAAGACATGATATAGCACAGCTTAAATTTCTTTGCGAAACCCTGTATCATGACTGTCTTGC
AAACCTTGAAGAAAGCAACCATGGCTGGGTTAATGACCCGACCTCAGCAGTCAACCTGCAGCTCAATGAGCTGATAGAGC
ATATTGCAACTTTCGCGCTTAATTATAAAATTAAGTACAATGAAGACAATAAATTGATTGCGCAGATAGATGAATACCTG
GACGACACCTTTATGTTGTTCAGCAGCTATGGTATTAATACGCAGGATTTGCAAAAATGGCGTAAATCGGGCAACCGCCT
GTTCCGTTGTTTCGTCAACGCCACCAGGGCCAATCCTGTTAGTTTGTCTTGTTAA
ATGGACGAATACTCACCCAAAAGACATGATATAGCACAGCTTAAATTTCTTTGCGAAACCCTGTATCATGACTGTCTTGC
AAACCTTGAAGAAAGCAACCATGGCTGGGTTAATGACCCGACCTCAGCAGTCAACCTGCAGCTCAATGAGCTGATAGAGC
ATATTGCAACTTTCGCGCTTAATTATAAAATTAAGTACAATGAAGACAATAAATTGATTGCGCAGATAGATGAATACCTG
GACGACACCTTTATGTTGTTCAGCAGCTATGGTATTAATACGCAGGATTTGCAAAAATGGCGTAAATCGGGCAACCGCCT
GTTCCGTTGTTTCGTCAACGCCACCAGGGCCAATCCTGTTAGTTTGTCTTGTTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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