Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | I | Classification (family/domain) | txpA-SprF2/- |
Location | 1781822..1782121 | Replicon | chromosome |
Accession | NZ_CP047779 | ||
Organism | Staphylococcus aureus strain UP_1559 |
Toxin (Protein)
Gene name | txpA | Uniprot ID | Q2FWU9 |
Locus tag | E3T12_RS08970 | Protein ID | WP_011447039.1 |
Coordinates | 1781945..1782121 (-) | Length | 59 a.a. |
Antitoxin (RNA)
Gene name | SprF2 | ||
Locus tag | - | ||
Coordinates | 1781822..1781877 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
E3T12_RS08930 | 1777152..1777412 | + | 261 | WP_001791826.1 | hypothetical protein | - |
E3T12_RS08935 | 1777465..1777815 | - | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
E3T12_RS08940 | 1778501..1778950 | + | 450 | WP_000727649.1 | chemotaxis-inhibiting protein CHIPS | - |
E3T12_RS08945 | 1779045..1779380 | - | 336 | Protein_1720 | SH3 domain-containing protein | - |
E3T12_RS08950 | 1780030..1780521 | - | 492 | WP_000919350.1 | staphylokinase | - |
E3T12_RS08955 | 1780712..1781467 | - | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
E3T12_RS08960 | 1781479..1781733 | - | 255 | WP_000611512.1 | phage holin | - |
E3T12_RS08965 | 1781785..1781892 | + | 108 | WP_001791821.1 | hypothetical protein | - |
- | 1781814..1781953 | + | 140 | NuclAT_0 | - | - |
- | 1781814..1781953 | + | 140 | NuclAT_0 | - | - |
- | 1781814..1781953 | + | 140 | NuclAT_0 | - | - |
- | 1781814..1781953 | + | 140 | NuclAT_0 | - | - |
- | 1781822..1781877 | + | 56 | - | - | Antitoxin |
E3T12_RS08970 | 1781945..1782121 | - | 177 | WP_011447039.1 | putative holin-like toxin | Toxin |
E3T12_RS08975 | 1782230..1783003 | - | 774 | WP_000750406.1 | staphylococcal enterotoxin type A | - |
E3T12_RS08980 | 1783424..1783798 | - | 375 | WP_000340977.1 | hypothetical protein | - |
E3T12_RS08985 | 1783854..1784141 | - | 288 | WP_001040259.1 | hypothetical protein | - |
E3T12_RS08990 | 1784188..1784340 | - | 153 | WP_001153681.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Prophage | - | scn / chp / sak / sea / hlb / groEL | 1777465..1833429 | 55964 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 59 a.a. Molecular weight: 6849.45 Da Isoelectric Point: 10.6777
>T147568 WP_011447039.1 NZ_CP047779:c1782121-1781945 [Staphylococcus aureus]
MDRWWLSEYKEVVPMVALLKSLERRRLMITISTMLQFGLFLIALIGLVIKLIELSNKK
MDRWWLSEYKEVVPMVALLKSLERRRLMITISTMLQFGLFLIALIGLVIKLIELSNKK
Download Length: 177 bp
>T147568 NZ_CP063057:c5064705-5063827 [Comamonas thiooxydans]
ATGCACGAGGATTTGCTGTCGCTGAAACAGCAGCTGCTGCAGACCGGTTTTCCCGAGCAACTGGTGAAGCTTCCGCAGAA
GGCCCAGGTCGCCTGGCGCGAGGCTGGCGATGCCAGCTCCGATTTTGCGGTGGTGCTGCTGCATGGCATCAGCTCCGGGG
CTGCATCCTGGCTGGATGTGGCGCTGCTGCTGGGTGACAAGGCGCGCGTTCTGGCCTGGGATGCACCTGGCTATGGCGTG
TCGACGCCGCTGGCCCAATCGGCGCCTGCCGATGCCGACTATGCGCAGGTGCTGGCCCAGTCACTGCTGGTGCTCGGTGT
GCGGCGCTGCCTGCTGGTCGGCCATTCCCTGGGCGCCCTGATGGCGGCCAGGCTGGCAGTCACGGCGGCCCCCGGGCTGG
TCGAGCAACTGGTGCTCATCAGCCCGGCGGGCGGCTACGGCGCCCCAGCCAAGGCCGAGCAGCAGGCCAAGGTACGCGAG
GGCCGCCTGGCGGCTCTGGCCGAGAAGGGCGTCGCCGGTCTGGCGGCCGTCATCGATCAGCGCCTGGTGTCCTCCGAGGC
TCCTGAAGCCGTGCGTGCATGGGTGCGCTGGAATACGGCGCGCATGCAGCCGCAGGGCTATGCGCAGGCGGTCGAGCTGC
TTTGCGGCAGCGATCTGGCACAGGCACGGGGCAGGCTTGGCATGCCGGTCGAGGTTTGGGTCGGCGAGCACGATGTGGTG
ACTACACCTGCAGCTTGCAAGTCCTGGTCCGAACTGCTGGGCGCGCACTACGGTACGCTTGCGGCTGCCGGTCATGCTTC
ACCCGTGGAACAACCAATGGAGGTCGCGCATAGGCTGGCATCTTTGTTGAACCAAAGCTATTGCCCCAATACCAGCTGA
ATGCACGAGGATTTGCTGTCGCTGAAACAGCAGCTGCTGCAGACCGGTTTTCCCGAGCAACTGGTGAAGCTTCCGCAGAA
GGCCCAGGTCGCCTGGCGCGAGGCTGGCGATGCCAGCTCCGATTTTGCGGTGGTGCTGCTGCATGGCATCAGCTCCGGGG
CTGCATCCTGGCTGGATGTGGCGCTGCTGCTGGGTGACAAGGCGCGCGTTCTGGCCTGGGATGCACCTGGCTATGGCGTG
TCGACGCCGCTGGCCCAATCGGCGCCTGCCGATGCCGACTATGCGCAGGTGCTGGCCCAGTCACTGCTGGTGCTCGGTGT
GCGGCGCTGCCTGCTGGTCGGCCATTCCCTGGGCGCCCTGATGGCGGCCAGGCTGGCAGTCACGGCGGCCCCCGGGCTGG
TCGAGCAACTGGTGCTCATCAGCCCGGCGGGCGGCTACGGCGCCCCAGCCAAGGCCGAGCAGCAGGCCAAGGTACGCGAG
GGCCGCCTGGCGGCTCTGGCCGAGAAGGGCGTCGCCGGTCTGGCGGCCGTCATCGATCAGCGCCTGGTGTCCTCCGAGGC
TCCTGAAGCCGTGCGTGCATGGGTGCGCTGGAATACGGCGCGCATGCAGCCGCAGGGCTATGCGCAGGCGGTCGAGCTGC
TTTGCGGCAGCGATCTGGCACAGGCACGGGGCAGGCTTGGCATGCCGGTCGAGGTTTGGGTCGGCGAGCACGATGTGGTG
ACTACACCTGCAGCTTGCAAGTCCTGGTCCGAACTGCTGGGCGCGCACTACGGTACGCTTGCGGCTGCCGGTCATGCTTC
ACCCGTGGAACAACCAATGGAGGTCGCGCATAGGCTGGCATCTTTGTTGAACCAAAGCTATTGCCCCAATACCAGCTGA
Antitoxin
Download Length: 56 bp
>AT147568 NZ_CP047779:1781822-1781877 [Staphylococcus aureus]
AAAAAGGGCAACATGCGCAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTG
AAAAAGGGCAACATGCGCAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTG
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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