Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/RelE-MqsA |
| Location | 1247879..1248512 | Replicon | chromosome |
| Accession | NZ_CP046804 | ||
| Organism | Vibrio cidicii strain 2756-81 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | A0A151JL06 |
| Locus tag | GPY24_RS11715 | Protein ID | WP_061892970.1 |
| Coordinates | 1248180..1248512 (-) | Length | 111 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | GPY24_RS11710 | Protein ID | WP_000071008.1 |
| Coordinates | 1247879..1248193 (-) | Length | 105 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY24_RS11665 | 1243255..1243671 | - | 417 | WP_039428628.1 | GFA family protein | - |
| GPY24_RS11670 | 1243711..1243833 | - | 123 | Protein_1134 | DUF3265 domain-containing protein | - |
| GPY24_RS11675 | 1244190..1244315 | - | 126 | WP_084834037.1 | DUF3265 domain-containing protein | - |
| GPY24_RS11680 | 1244646..1244747 | - | 102 | WP_156478485.1 | DUF3265 domain-containing protein | - |
| GPY24_RS11685 | 1245414..1245707 | - | 294 | WP_061897932.1 | hypothetical protein | - |
| GPY24_RS11690 | 1245746..1245905 | - | 160 | Protein_1138 | DUF3265 domain-containing protein | - |
| GPY24_RS11695 | 1246228..1246359 | - | 132 | Protein_1139 | DUF3265 domain-containing protein | - |
| GPY24_RS11700 | 1246836..1246961 | - | 126 | Protein_1140 | DUF3265 domain-containing protein | - |
| GPY24_RS11705 | 1247303..1247428 | - | 126 | Protein_1141 | DUF3265 domain-containing protein | - |
| GPY24_RS11710 | 1247879..1248193 | - | 315 | WP_000071008.1 | DNA-binding transcriptional regulator | Antitoxin |
| GPY24_RS11715 | 1248180..1248512 | - | 333 | WP_061892970.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| GPY24_RS11720 | 1248580..1248702 | - | 123 | WP_156478486.1 | DUF3265 domain-containing protein | - |
| GPY24_RS11725 | 1249514..1249639 | - | 126 | WP_081947101.1 | DUF3265 domain-containing protein | - |
| GPY24_RS11730 | 1250103..1250564 | - | 462 | WP_065818763.1 | hypothetical protein | - |
| GPY24_RS11735 | 1250573..1250719 | - | 147 | WP_084834170.1 | DUF3265 domain-containing protein | - |
| GPY24_RS11740 | 1250729..1250950 | - | 222 | WP_017420735.1 | VF530 family protein | - |
| GPY24_RS11745 | 1251110..1251169 | - | 60 | WP_156478487.1 | DUF3265 domain-containing protein | - |
| GPY24_RS11755 | 1252900..1253043 | - | 144 | WP_156478488.1 | DUF3265 domain-containing protein | - |
| GPY24_RS11760 | 1253025..1253504 | - | 480 | WP_065818765.1 | GNAT family N-acetyltransferase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integron | - | - | 1214463..1284432 | 69969 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 111 a.a. Molecular weight: 13034.00 Da Isoelectric Point: 9.9244
>T144960 WP_061892970.1 NZ_CP046804:c1248512-1248180 [Vibrio cidicii]
MKSVFVESTIFEKYRDEYLSDEEYRLFQAELMLNPKLGDVIQGTGGLRKIRVASKGKGKRGGSRIIYYFLDEKRRFYLLT
IYGKNEMSDLNANQRKQLMAFMEVWRNEQS
MKSVFVESTIFEKYRDEYLSDEEYRLFQAELMLNPKLGDVIQGTGGLRKIRVASKGKGKRGGSRIIYYFLDEKRRFYLLT
IYGKNEMSDLNANQRKQLMAFMEVWRNEQS
Download Length: 333 bp
>T144960 NZ_CP062247:c3229017-3228703 [Escherichia coli]
ATGCACCTGATAACTCAAAAAGCATTGAAAGATGCTGCGGAAAAATACCCGCAACATAAAACGGAGTTGGTGGCTCTGGG
GAACACGATTGCTAAGGGATATTTCAAAAAACCTGAGTCATTAAAAGCAGTATTCCCATCTCTGGATAACTTCAAATATC
TGGATAAGCATTATGTTTTCAATGTTGGGGGCAATGAATTACGTGTTGTAGCAATGGTCTTTTTTGAATCGCAAAAGTGC
TACATACGTGAAGTTATGACGCATAAAGAATACGATTTCTTTACCGCTGTTCATCGTACTAAGGGGAAAAAATGA
ATGCACCTGATAACTCAAAAAGCATTGAAAGATGCTGCGGAAAAATACCCGCAACATAAAACGGAGTTGGTGGCTCTGGG
GAACACGATTGCTAAGGGATATTTCAAAAAACCTGAGTCATTAAAAGCAGTATTCCCATCTCTGGATAACTTCAAATATC
TGGATAAGCATTATGTTTTCAATGTTGGGGGCAATGAATTACGTGTTGTAGCAATGGTCTTTTTTGAATCGCAAAAGTGC
TACATACGTGAAGTTATGACGCATAAAGAATACGATTTCTTTACCGCTGTTCATCGTACTAAGGGGAAAAAATGA
Antitoxin
Download Length: 105 a.a. Molecular weight: 11696.20 Da Isoelectric Point: 6.7600
>AT144960 WP_000071008.1 NZ_CP046804:c1248193-1247879 [Vibrio cidicii]
MSNRDLFAELSSALVEAKQHSEGKLTLKTHHVNDVGELNISPDEIVSIREQFNMSRGVFARLLHTSSRTLENWEQGRSVP
NGQAVTLLKLVQRHPETLSHIAEL
MSNRDLFAELSSALVEAKQHSEGKLTLKTHHVNDVGELNISPDEIVSIREQFNMSRGVFARLLHTSSRTLENWEQGRSVP
NGQAVTLLKLVQRHPETLSHIAEL
Download Length: 315 bp
>AT144960 NZ_CP062247:c3228706-3228290 [Escherichia coli]
ATGATTGCGATTGCCGACATCTTGCAAGCAGGAGAAAAGCTAACTGCTGTGGCACCTTTTCTGGCGGGTATTCAGAACGA
GGAACAATACACCCAGGCGCTGGAACTGGTAGATCATCTGCTGCTCAACGATCCTGAAAACCCCTTGCTGGATCTGGTGT
GTGCCAAAATAACCGCGTGGGAAGAATCAGCGCCCGAATTTGCGGAATTTAATGCCATGGCTCAAGCCATGCCTGGCGGT
ATAGCCGTGATTCGTACCCTTATGGATCAATATGGTTTAACCCTTTCCGATCTGCCGGAAATTGGCAGTAAATCTATGGT
GTCACGCGTTTTGAGCGGGAAGAGGAAATTAACGCTGGAACACGCTAAAAAATTGGCAACGCGATTCGGCATTTCTCCCG
CCTTGTTTATTGATTAA
ATGATTGCGATTGCCGACATCTTGCAAGCAGGAGAAAAGCTAACTGCTGTGGCACCTTTTCTGGCGGGTATTCAGAACGA
GGAACAATACACCCAGGCGCTGGAACTGGTAGATCATCTGCTGCTCAACGATCCTGAAAACCCCTTGCTGGATCTGGTGT
GTGCCAAAATAACCGCGTGGGAAGAATCAGCGCCCGAATTTGCGGAATTTAATGCCATGGCTCAAGCCATGCCTGGCGGT
ATAGCCGTGATTCGTACCCTTATGGATCAATATGGTTTAACCCTTTCCGATCTGCCGGAAATTGGCAGTAAATCTATGGT
GTCACGCGTTTTGAGCGGGAAGAGGAAATTAACGCTGGAACACGCTAAAAAATTGGCAACGCGATTCGGCATTTCTCCCG
CCTTGTTTATTGATTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|