Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-RelB
Location 1886633..1887141 Replicon chromosome
Accession NZ_CP046566
Organism Phnomibacter ginsenosidimutans strain SB-02

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag GLV81_RS08130 Protein ID WP_157478425.1
Coordinates 1886633..1886887 (-) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag GLV81_RS08135 Protein ID WP_157478427.1
Coordinates 1886887..1887141 (-) Length 85 a.a.

Genomic Context

GLV81_RS08115GLV81_RS08120GLV81_RS08125GLV81_RS08160GLV81_RS08165GLV81_RS08130GLV81_RS08135GLV81_RS08145GLV81_RS08150GLV81_RS08155
Location: 1882538..1883503 (966 bp)
Type: Others
Protein ID: WP_157478419.1
Location: 1883558..1885240 (1683 bp)
Type: Others
Protein ID: WP_157478421.1
Location: 1885436..1886470 (1035 bp)
Type: Others
Protein ID: WP_157478423.1
Location: 1889892..1890991 (1100 bp)
Type: Others
Protein ID: Protein_1635
Location: 1891078..1891413 (336 bp)
Type: Others
Protein ID: WP_157478434.1
Location: 1886633..1886887 (255 bp)
Type: Toxin
Protein ID: WP_157478425.1
Location: 1886887..1887141 (255 bp)
Type: Antitoxin
Protein ID: WP_157478427.1
Location: 1887768..1888154 (387 bp)
Type: Others
Protein ID: WP_157478429.1
Location: 1888219..1888455 (237 bp)
Type: Others
Protein ID: WP_157478431.1
Location: 1888644..1889411 (768 bp)
Type: Others
Protein ID: WP_157478433.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
GLV81_RS081151882538..1883503+966WP_157478419.1polyprenyl synthetase family protein-
GLV81_RS081201883558..1885240+1683WP_157478421.1amino acid permease-
GLV81_RS081251885436..1886470+1035WP_157478423.1Smr/MutS family protein-
GLV81_RS081301886633..1886887-255WP_157478425.1Txe/YoeB family addiction module toxinToxin
GLV81_RS081351886887..1887141-255WP_157478427.1type II toxin-antitoxin system prevent-host-death family antitoxinAntitoxin
GLV81_RS081451887768..1888154-387WP_157478429.1hypothetical protein-
GLV81_RS081501888219..1888455-237WP_157478431.1hypothetical protein-
GLV81_RS081551888644..1889411-768WP_157478433.1hypothetical protein-
GLV81_RS081601889892..1890991+1100Protein_1635peptide chain release factor 2-
GLV81_RS081651891078..1891413+336WP_157478434.1multidrug efflux SMR transporter-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-72)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10337.81 Da        Isoelectric Point: 8.9317

>T144512 WP_157478425.1 NZ_CP046566:c1886887-1886633 [Phnomibacter ginsenosidimutans]
MQLSWDIHAWEDYLYWQQTDKAVMKKINELIKECLRTPFDGRGKPEALKANYAGYWSRRITGEHRLVYRVYEDRLHVVQC
RYHY

Download         Length: 255 bp

>T144512 NZ_CP062113:c201474-200956 [Aminobacter sp. SR38]
ATGCCTGAAGCCGGCCTGCAGAAGCAGCGGACCTTGTGGCGGGCCTTCGTGCCGCGCTGGGCGCATATGCCGCTTTCGGG
CGAAGGTGCCGCACGTTTCGGCGGGCGATGGAACCCGGTGGGCGCACCGACGCTGTATGCGGCCTGCGAGCTGTCGACGG
CCTGGGCCGAATACAACCAGGGTTTTGTCCAGCACCCGGCGCTGATCGCCCAGCTCGAGCTGTCGGAGGCGAGGCTGGCC
GACCTGACTGTTGCCGCGATTTTGGATGAACTCGGCATTGACGCCAGGATCCACAGATGTGAGTGGCGTTCCGATCTCGA
CGACGGCAGGGCACCGCAAACCCATCTGCTGCGGCAGCGCCTGCTCACCGAAGGCTTTGACGGCGTCGTCTATCCCTCGT
TCATGTCTCCCGGCGGCAGTTGCGTAGCATTGTGGCGCTGGAACGGTCCCGGCCAGCCATCACTCAAGGTTATAGATCCT
GATCAGCGCCTGCCCAAGACGCAGGCCTCCTGGCTTTAG

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9419.92 Da        Isoelectric Point: 8.5256

>AT144512 WP_157478427.1 NZ_CP046566:c1887141-1886887 [Phnomibacter ginsenosidimutans]
MKVINYTAFRAKMKDTLDSVTKDGETVMVNRNEKETAVIISLDEYNGLMETLHLMKSPANKARLDAAIARDKKGLSEKHA
LIEP

Download         Length: 255 bp

>AT144512 NZ_CP062113:c201838-201467 [Aminobacter sp. SR38]
ATGGCAGCTCAGAGTTTGGGAATGTCGGCGGCCCATTTCGGTGAGGCCCGGTCGCAGTTTCTCTCGGCTCGCCGCGTGTC
GGAGTTGCTGGGTGTCACCCAGGCCGACCTGGCCCGGCTCGTTGGCGTTGCCCGCAACACGCTGACGGCGCGCTCCGGGG
CACGCAAGGTCGACCAGGCGCTCAGCCCCGTCGTCCGCATTCTGGCGATGGCCGCCGAGATGGCGGGCGACGAAAGCCGC
GCGGCGATCTGGTTCAAGCATCAGCCCATCCCGGGCTGGGCCGGCAAGACGGCCTATGACCTGGTCGGCGAGGGCAAGGC
GGACAAGGTTCTGGCCTATCTGGAGGCGGTGCGCTCCGGCGTTTATGCCTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References