Detailed information of TA system TA143096

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): higBA (relBE)/COG4683-HTH_37
• Location: 13609..14266
• Replicon: plasmid pAUSMDU00008979_01
• Accession: NZ_CP045953
• Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00008979

Toxin (Protein)

• Gene name: higB
• Uniprot ID: U3PDC3
• Locus tag: GJE10_RS25125
• Protein ID: WP_000270043.1
• Coordinates: 13916..14266 (-)
• Length: 117 a.a.

Antitoxin (Protein)

• Gene name: higA
• Uniprot ID: -
• Locus tag: GJE10_RS25120
• Protein ID: WP_000124640.1
• Coordinates: 13609..13911 (-)
• Length: 101 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
GJE10_RS25075	9234..9662	+	429	WP_000591074.1	hypothetical protein	-
GJE10_RS25080	9719..10078	+	360	WP_000422768.1	hypothetical protein	-
GJE10_RS25085	10078..10524	+	447	WP_000919345.1	Fe3+-siderophore ABC transporter permease	-
GJE10_RS25090	10521..11039	+	519	WP_000210756.1	nitrite reductase	-
GJE10_RS25095	11039..11269	+	231	WP_000972663.1	hypothetical protein	-
GJE10_RS25100	11256..12113	+	858	WP_001167032.1	hypothetical protein	-
GJE10_RS25105	12344..12871	+	528	WP_001236377.1	thermonuclease family protein	-
GJE10_RS25110	12929..13201	+	273	WP_001043047.1	HU family DNA-binding protein	-
GJE10_RS25115	13289..13582	+	294	WP_001239997.1	chromosome segregation protein ParM	-
GJE10_RS25120	13609..13911	-	303	WP_000124640.1	XRE family transcriptional regulator	Antitoxin
GJE10_RS25125	13916..14266	-	351	WP_000270043.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
GJE10_RS25130	14429..14977	+	549	WP_001061574.1	transcriptional regulator	-
GJE10_RS25135	15318..15512	+	195	WP_000343597.1	hypothetical protein	-
GJE10_RS25140	15523..15894	+	372	WP_000516916.1	hypothetical protein	-
GJE10_RS25145	15887..16357	+	471	WP_001281821.1	hypothetical protein	-
GJE10_RS25150	16372..16707	-	336	WP_000683476.1	hypothetical protein	-
GJE10_RS25155	16804..17292	+	489	WP_001273096.1	DUF1643 domain-containing protein	-
GJE10_RS25160	17295..17792	+	498	WP_000062185.1	hypothetical protein	-
GJE10_RS25165	18007..18711	-	705	WP_001067855.1	IS6-like element IS26 family transposase	-
GJE10_RS25170	18776..18955	-	180	Protein_32	helix-turn-helix transcriptional regulator	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Non-Mobilizable plasmid	-	-	1..144821	144821

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Type I toxin-antitoxin system, toxin Ldr (1-35)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 117 a.a.
• Molecular weight: 17237.68 Da
• Isoelectric Point: 5.5500

>T143096 WP_000270043.1 NZ_CP045953:c14266-13916 [Salmonella enterica subsp. enterica serovar Typhimurium]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF

Nucleotide

• Length: 351 bp

>T143096 NZ_CP060946:c322109-322002 [Escherichia coli O157:H7 str. EC10]
ATGACGCTCGCGAAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGGATTATTACCGCAGCGAT
TGTCGGCTGGTGGCGTAACCGGAAGTAA

Antitoxin

Protein

• Length: 101 a.a.
• Molecular weight: 14882.85 Da
• Isoelectric Point: 5.5500

>AT143096 WP_000124640.1 NZ_CP045953:c13911-13609 [Salmonella enterica subsp. enterica serovar Typhimurium]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFF

Nucleotide

• Length: 303 bp

>AT143096 NZ_CP060946:322162-322223 [Escherichia coli O157:H7 str. EC10]
TGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCT

Structures

Toxin

• AlphaFold DB: A0A7G8AFB9