142814

Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 4776557..4777311 Replicon chromosome
Accession NZ_CP045840
Organism Citrobacter sp. S40-1-2

Toxin (Protein)


Gene name higB Uniprot ID A0A5B0T5Y1
Locus tag GHC23_RS22675 Protein ID WP_048215202.1
Coordinates 4776557..4776868 (+) Length 104 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag GHC23_RS22680 Protein ID WP_048215203.1
Coordinates 4776865..4777311 (+) Length 149 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GHC23_RS22645 4772224..4773126 + 903 WP_003825273.1 formate dehydrogenase O subunit beta -
GHC23_RS22650 4773123..4773758 + 636 WP_003028686.1 formate dehydrogenase cytochrome b556 subunit -
GHC23_RS22655 4773755..4774684 + 930 WP_003028685.1 formate dehydrogenase accessory protein FdhE -
GHC23_RS22660 4774721..4775095 - 375 WP_020996118.1 type II toxin-antitoxin system VapC family toxin -
GHC23_RS22665 4775095..4775337 - 243 WP_020996119.1 ribbon-helix-helix domain-containing protein -
GHC23_RS22670 4775543..4776472 + 930 WP_103285937.1 alpha/beta hydrolase -
GHC23_RS22675 4776557..4776868 + 312 WP_048215202.1 type II toxin-antitoxin system HigB family toxin Toxin
GHC23_RS22680 4776865..4777311 + 447 WP_048215203.1 helix-turn-helix domain-containing protein Antitoxin
GHC23_RS22685 4777329..4778270 - 942 WP_003825286.1 fatty acid biosynthesis protein FabY -
GHC23_RS22690 4778315..4778752 - 438 WP_003825289.1 D-tyrosyl-tRNA(Tyr) deacylase -
GHC23_RS22695 4778749..4779621 - 873 WP_008786998.1 virulence factor BrkB family protein -
GHC23_RS22700 4779615..4780214 - 600 WP_153753923.1 glucose-1-phosphatase -
GHC23_RS22705 4780305..4781195 - 891 WP_153753924.1 aldose 1-epimerase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 104 a.a.        Molecular weight: 12345.28 Da        Isoelectric Point: 9.5337

>T142814 WP_048215202.1 NZ_CP045840:4776557-4776868 [Citrobacter sp. S40-1-2]
VHVISRKPFNEAMLMYPNHQLALADLLNVLEKKTFIQPEEMKQYIPSLDNFKYRDKWWVIDVSGNSLRLISYIDFRSHKI
FVKHIVSHAEYDKLTAYYRGNKE

Download         Length: 312 bp

>T142814 NZ_CP060873:c4317070-4316897 [Escherichia coli]
ATGGCACTATTCTCTAAAATATTAATTTTTTATGTGATTGGTGTGAACATATCCTTTGTCATTATCTGGTTTATCTCACA
TGAGAAAACACATATTCGTTTACTTAGTGCATTCCTGGTCGGAATAACCTGGCCAATGAGTCTGCCTGTGGCATTACTTT
TTTCTCTCTTTTAG

Antitoxin


Download         Length: 149 a.a.        Molecular weight: 16660.97 Da        Isoelectric Point: 6.7580

>AT142814 WP_048215203.1 NZ_CP045840:4776865-4777311 [Citrobacter sp. S40-1-2]
MRTHRHMDAASAKKIVDTFSDAVKTIPLLGEDRNDTEYRRALALVEYLVDHDDLENPLFELLCARISKYEKHAPEFKALN
QHLEKTPSGVSVLRTLMDQYSLKAADLANELGSKSNVSNILNGRRALTVSHIKALAERFNLPADAFIE

Download         Length: 447 bp

>AT142814 NZ_CP060873:c4317394-4317098 [Escherichia coli]
ATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTAATTATCCATCATCTTATTCCTCAGTGTTCTTAAGGTT
AAGATCATTGATGTATGATATGAATTTCTCCTCTATCGTGGCTGATGAATATGGGATACCACGACAATTGAATGAAAACT
CCTTCGCAATAACGACATCGTTAGCCGCAAGTGAAATCGAAGATTTAATCAGGCTTAAATGCTTAGACTTACCGGATATT
GACTTTGACCTCAACATTATGACAGTTGATGACTATTTCCGTCAGTTTTACAAGTAG

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB A0A5B0T5Y1


Antitoxin

Source ID Structure

References