Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/HigB-HigA |
Location | 4776557..4777311 | Replicon | chromosome |
Accession | NZ_CP045840 | ||
Organism | Citrobacter sp. S40-1-2 |
Toxin (Protein)
Gene name | higB | Uniprot ID | A0A5B0T5Y1 |
Locus tag | GHC23_RS22675 | Protein ID | WP_048215202.1 |
Coordinates | 4776557..4776868 (+) | Length | 104 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | - |
Locus tag | GHC23_RS22680 | Protein ID | WP_048215203.1 |
Coordinates | 4776865..4777311 (+) | Length | 149 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
GHC23_RS22645 | 4772224..4773126 | + | 903 | WP_003825273.1 | formate dehydrogenase O subunit beta | - |
GHC23_RS22650 | 4773123..4773758 | + | 636 | WP_003028686.1 | formate dehydrogenase cytochrome b556 subunit | - |
GHC23_RS22655 | 4773755..4774684 | + | 930 | WP_003028685.1 | formate dehydrogenase accessory protein FdhE | - |
GHC23_RS22660 | 4774721..4775095 | - | 375 | WP_020996118.1 | type II toxin-antitoxin system VapC family toxin | - |
GHC23_RS22665 | 4775095..4775337 | - | 243 | WP_020996119.1 | ribbon-helix-helix domain-containing protein | - |
GHC23_RS22670 | 4775543..4776472 | + | 930 | WP_103285937.1 | alpha/beta hydrolase | - |
GHC23_RS22675 | 4776557..4776868 | + | 312 | WP_048215202.1 | type II toxin-antitoxin system HigB family toxin | Toxin |
GHC23_RS22680 | 4776865..4777311 | + | 447 | WP_048215203.1 | helix-turn-helix domain-containing protein | Antitoxin |
GHC23_RS22685 | 4777329..4778270 | - | 942 | WP_003825286.1 | fatty acid biosynthesis protein FabY | - |
GHC23_RS22690 | 4778315..4778752 | - | 438 | WP_003825289.1 | D-tyrosyl-tRNA(Tyr) deacylase | - |
GHC23_RS22695 | 4778749..4779621 | - | 873 | WP_008786998.1 | virulence factor BrkB family protein | - |
GHC23_RS22700 | 4779615..4780214 | - | 600 | WP_153753923.1 | glucose-1-phosphatase | - |
GHC23_RS22705 | 4780305..4781195 | - | 891 | WP_153753924.1 | aldose 1-epimerase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 a.a. Molecular weight: 12345.28 Da Isoelectric Point: 9.5337
>T142814 WP_048215202.1 NZ_CP045840:4776557-4776868 [Citrobacter sp. S40-1-2]
VHVISRKPFNEAMLMYPNHQLALADLLNVLEKKTFIQPEEMKQYIPSLDNFKYRDKWWVIDVSGNSLRLISYIDFRSHKI
FVKHIVSHAEYDKLTAYYRGNKE
VHVISRKPFNEAMLMYPNHQLALADLLNVLEKKTFIQPEEMKQYIPSLDNFKYRDKWWVIDVSGNSLRLISYIDFRSHKI
FVKHIVSHAEYDKLTAYYRGNKE
Download Length: 312 bp
>T142814 NZ_CP060873:c4317070-4316897 [Escherichia coli]
ATGGCACTATTCTCTAAAATATTAATTTTTTATGTGATTGGTGTGAACATATCCTTTGTCATTATCTGGTTTATCTCACA
TGAGAAAACACATATTCGTTTACTTAGTGCATTCCTGGTCGGAATAACCTGGCCAATGAGTCTGCCTGTGGCATTACTTT
TTTCTCTCTTTTAG
ATGGCACTATTCTCTAAAATATTAATTTTTTATGTGATTGGTGTGAACATATCCTTTGTCATTATCTGGTTTATCTCACA
TGAGAAAACACATATTCGTTTACTTAGTGCATTCCTGGTCGGAATAACCTGGCCAATGAGTCTGCCTGTGGCATTACTTT
TTTCTCTCTTTTAG
Antitoxin
Download Length: 149 a.a. Molecular weight: 16660.97 Da Isoelectric Point: 6.7580
>AT142814 WP_048215203.1 NZ_CP045840:4776865-4777311 [Citrobacter sp. S40-1-2]
MRTHRHMDAASAKKIVDTFSDAVKTIPLLGEDRNDTEYRRALALVEYLVDHDDLENPLFELLCARISKYEKHAPEFKALN
QHLEKTPSGVSVLRTLMDQYSLKAADLANELGSKSNVSNILNGRRALTVSHIKALAERFNLPADAFIE
MRTHRHMDAASAKKIVDTFSDAVKTIPLLGEDRNDTEYRRALALVEYLVDHDDLENPLFELLCARISKYEKHAPEFKALN
QHLEKTPSGVSVLRTLMDQYSLKAADLANELGSKSNVSNILNGRRALTVSHIKALAERFNLPADAFIE
Download Length: 447 bp
>AT142814 NZ_CP060873:c4317394-4317098 [Escherichia coli]
ATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTAATTATCCATCATCTTATTCCTCAGTGTTCTTAAGGTT
AAGATCATTGATGTATGATATGAATTTCTCCTCTATCGTGGCTGATGAATATGGGATACCACGACAATTGAATGAAAACT
CCTTCGCAATAACGACATCGTTAGCCGCAAGTGAAATCGAAGATTTAATCAGGCTTAAATGCTTAGACTTACCGGATATT
GACTTTGACCTCAACATTATGACAGTTGATGACTATTTCCGTCAGTTTTACAAGTAG
ATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTAATTATCCATCATCTTATTCCTCAGTGTTCTTAAGGTT
AAGATCATTGATGTATGATATGAATTTCTCCTCTATCGTGGCTGATGAATATGGGATACCACGACAATTGAATGAAAACT
CCTTCGCAATAACGACATCGTTAGCCGCAAGTGAAATCGAAGATTTAATCAGGCTTAAATGCTTAGACTTACCGGATATT
GACTTTGACCTCAACATTATGACAGTTGATGACTATTTCCGTCAGTTTTACAAGTAG
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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