Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 2498998..2499560 Replicon chromosome
Accession NZ_CP045837
Organism Citrobacter sp. H12-3-2

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag GHC22_RS11945 Protein ID WP_153753041.1
Coordinates 2499282..2499560 (-) Length 93 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID A0A6H3AUF8
Locus tag GHC22_RS11940 Protein ID WP_003833018.1
Coordinates 2498998..2499282 (-) Length 95 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GHC22_RS11925 2496693..2497577 + 885 WP_003833024.1 formate dehydrogenase N subunit beta -
GHC22_RS11930 2497570..2498226 + 657 WP_003020054.1 formate dehydrogenase-N subunit gamma -
GHC22_RS11935 2498356..2498958 + 603 WP_003833020.1 inorganic diphosphatase -
GHC22_RS11940 2498998..2499282 - 285 WP_003833018.1 HigA family addiction module antidote protein Antitoxin
GHC22_RS11945 2499282..2499560 - 279 WP_153753041.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
GHC22_RS11950 2499781..2501496 - 1716 WP_153753044.1 ATP-binding cassette domain-containing protein -
GHC22_RS11955 2501806..2503503 - 1698 WP_003833011.1 malate dehydrogenase -
GHC22_RS11960 2503683..2503823 - 141 WP_003833009.1 stationary-phase-induced ribosome-associated protein -
GHC22_RS11965 2504051..2504482 + 432 WP_153753046.1 OsmC family protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(4-92)

Antitoxin

(1-83)


Sequences


Toxin        


Download         Length: 93 a.a.        Molecular weight: 10666.32 Da        Isoelectric Point: 10.1807

>T142786 WP_153753041.1 NZ_CP045837:c2499560-2499282 [Citrobacter sp. H12-3-2]
MIMNFRHKGLRDLFLHGRTSGVMAKHVRRLRHRLAVINAASKVTDINMPGYKLHPLVGERDGIWAISVSGNWRITFEFVN
GDAYILDYEDYH

Download         Length: 279 bp

>T142786 NZ_CP060867:c3744997-3744590 [Escherichia coli]
GTGGTCCTGTGGCAATCTGATTTGCGCGTCTCCTGGCGCGCACAGTGGCTTTCCTTGCTGATTCATGGGCTGGTTGCCGC
TGTTATTTTACTCATGCCCTGGCCACTCAGTTACACCCCGTTATGGATGGTGTTACTTTCGCTGGTGGTGTTTGATTGCG
TTCGCAGCCAGCGGCGTATTAATGCTCGCCAGGGGGAAATTCGCTTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGAGCATCGTCAAAGCACCGTGGATGATTAAGAGCGGCATGATGCTGCGTTTACGTTCTGATGGCGGTAAACGGCA
ACATTTATGGCTGGCAGCCGACAGCATGGACGAAGCTGAATGGCGGGATTTACGGCGGATTTTGTTGCAACAAGAGACGC
AAAGATAA

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 10371.10 Da        Isoelectric Point: 8.8094

>AT142786 WP_003833018.1 NZ_CP045837:c2499282-2498998 [Citrobacter sp. H12-3-2]
MKMANHPRPGDIIQEALEELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPEMWLNLQNTWSLAEAQ
KSVDISRLRKLAVQ

Download         Length: 285 bp

>AT142786 NZ_CP060867:c3745244-3744978 [Escherichia coli]
ATGGACATTAACAACAAAGCCCGCATTCATTGGGCATGCCGCCGTGGTATGCGCGAACTCGATATTTCAATCATGCCGTT
TTTCGAACATGAGTACGACAGCTTAAGCGATGACGAAAAACGCATCTTTATTCGTCTGCTGGAATGTGACGATCCGGACC
TGTTTAACTGGCTGATGAATCACGGTAAACCGGCCGATGCAGAACTGGAAATGATGGTCCGACTCATCCAGACACGGAAC
CGGGAACGTGGTCCTGTGGCAATCTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure
AlphaFold DB A0A6H3AUF8

References