Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/HigB-HigA |
Location | 2498998..2499560 | Replicon | chromosome |
Accession | NZ_CP045837 | ||
Organism | Citrobacter sp. H12-3-2 |
Toxin (Protein)
Gene name | higB | Uniprot ID | - |
Locus tag | GHC22_RS11945 | Protein ID | WP_153753041.1 |
Coordinates | 2499282..2499560 (-) | Length | 93 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | A0A6H3AUF8 |
Locus tag | GHC22_RS11940 | Protein ID | WP_003833018.1 |
Coordinates | 2498998..2499282 (-) | Length | 95 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
GHC22_RS11925 | 2496693..2497577 | + | 885 | WP_003833024.1 | formate dehydrogenase N subunit beta | - |
GHC22_RS11930 | 2497570..2498226 | + | 657 | WP_003020054.1 | formate dehydrogenase-N subunit gamma | - |
GHC22_RS11935 | 2498356..2498958 | + | 603 | WP_003833020.1 | inorganic diphosphatase | - |
GHC22_RS11940 | 2498998..2499282 | - | 285 | WP_003833018.1 | HigA family addiction module antidote protein | Antitoxin |
GHC22_RS11945 | 2499282..2499560 | - | 279 | WP_153753041.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
GHC22_RS11950 | 2499781..2501496 | - | 1716 | WP_153753044.1 | ATP-binding cassette domain-containing protein | - |
GHC22_RS11955 | 2501806..2503503 | - | 1698 | WP_003833011.1 | malate dehydrogenase | - |
GHC22_RS11960 | 2503683..2503823 | - | 141 | WP_003833009.1 | stationary-phase-induced ribosome-associated protein | - |
GHC22_RS11965 | 2504051..2504482 | + | 432 | WP_153753046.1 | OsmC family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10666.32 Da Isoelectric Point: 10.1807
>T142786 WP_153753041.1 NZ_CP045837:c2499560-2499282 [Citrobacter sp. H12-3-2]
MIMNFRHKGLRDLFLHGRTSGVMAKHVRRLRHRLAVINAASKVTDINMPGYKLHPLVGERDGIWAISVSGNWRITFEFVN
GDAYILDYEDYH
MIMNFRHKGLRDLFLHGRTSGVMAKHVRRLRHRLAVINAASKVTDINMPGYKLHPLVGERDGIWAISVSGNWRITFEFVN
GDAYILDYEDYH
Download Length: 279 bp
>T142786 NZ_CP060867:c3744997-3744590 [Escherichia coli]
GTGGTCCTGTGGCAATCTGATTTGCGCGTCTCCTGGCGCGCACAGTGGCTTTCCTTGCTGATTCATGGGCTGGTTGCCGC
TGTTATTTTACTCATGCCCTGGCCACTCAGTTACACCCCGTTATGGATGGTGTTACTTTCGCTGGTGGTGTTTGATTGCG
TTCGCAGCCAGCGGCGTATTAATGCTCGCCAGGGGGAAATTCGCTTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGAGCATCGTCAAAGCACCGTGGATGATTAAGAGCGGCATGATGCTGCGTTTACGTTCTGATGGCGGTAAACGGCA
ACATTTATGGCTGGCAGCCGACAGCATGGACGAAGCTGAATGGCGGGATTTACGGCGGATTTTGTTGCAACAAGAGACGC
AAAGATAA
GTGGTCCTGTGGCAATCTGATTTGCGCGTCTCCTGGCGCGCACAGTGGCTTTCCTTGCTGATTCATGGGCTGGTTGCCGC
TGTTATTTTACTCATGCCCTGGCCACTCAGTTACACCCCGTTATGGATGGTGTTACTTTCGCTGGTGGTGTTTGATTGCG
TTCGCAGCCAGCGGCGTATTAATGCTCGCCAGGGGGAAATTCGCTTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGAGCATCGTCAAAGCACCGTGGATGATTAAGAGCGGCATGATGCTGCGTTTACGTTCTGATGGCGGTAAACGGCA
ACATTTATGGCTGGCAGCCGACAGCATGGACGAAGCTGAATGGCGGGATTTACGGCGGATTTTGTTGCAACAAGAGACGC
AAAGATAA
Antitoxin
Download Length: 95 a.a. Molecular weight: 10371.10 Da Isoelectric Point: 8.8094
>AT142786 WP_003833018.1 NZ_CP045837:c2499282-2498998 [Citrobacter sp. H12-3-2]
MKMANHPRPGDIIQEALEELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPEMWLNLQNTWSLAEAQ
KSVDISRLRKLAVQ
MKMANHPRPGDIIQEALEELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPEMWLNLQNTWSLAEAQ
KSVDISRLRKLAVQ
Download Length: 285 bp
>AT142786 NZ_CP060867:c3745244-3744978 [Escherichia coli]
ATGGACATTAACAACAAAGCCCGCATTCATTGGGCATGCCGCCGTGGTATGCGCGAACTCGATATTTCAATCATGCCGTT
TTTCGAACATGAGTACGACAGCTTAAGCGATGACGAAAAACGCATCTTTATTCGTCTGCTGGAATGTGACGATCCGGACC
TGTTTAACTGGCTGATGAATCACGGTAAACCGGCCGATGCAGAACTGGAAATGATGGTCCGACTCATCCAGACACGGAAC
CGGGAACGTGGTCCTGTGGCAATCTGA
ATGGACATTAACAACAAAGCCCGCATTCATTGGGCATGCCGCCGTGGTATGCGCGAACTCGATATTTCAATCATGCCGTT
TTTCGAACATGAGTACGACAGCTTAAGCGATGACGAAAAACGCATCTTTATTCGTCTGCTGGAATGTGACGATCCGGACC
TGTTTAACTGGCTGATGAATCACGGTAAACCGGCCGATGCAGAACTGGAAATGATGGTCCGACTCATCCAGACACGGAAC
CGGGAACGTGGTCCTGTGGCAATCTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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