Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 368064..368885 Replicon plasmid pEuc1
Accession NZ_CP045721
Organism Pantoea eucalypti strain LMG 24197

Toxin (Protein)


Gene name yhaV Uniprot ID -
Locus tag EE896_RS20610 Protein ID WP_140915932.1
Coordinates 368415..368885 (+) Length 157 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID -
Locus tag EE896_RS20605 Protein ID WP_140915933.1
Coordinates 368064..368408 (+) Length 115 a.a.

Genomic Context

EE896_RS20590EE896_RS20595EE896_RS20600EE896_RS20605EE896_RS20610EE896_RS20615EE896_RS20620
Location: 364067..365176 (1110 bp)
Type: Others
Protein ID: WP_003851511.1
Location: 365220..366521 (1302 bp)
Type: Others
Protein ID: WP_105099698.1
Location: 366626..367564 (939 bp)
Type: Others
Protein ID: WP_140915934.1
Location: 368064..368408 (345 bp)
Type: Antitoxin
Protein ID: WP_140915933.1
Location: 368415..368885 (471 bp)
Type: Toxin
Protein ID: WP_140915932.1
Location: 369073..371148 (2076 bp)
Type: Others
Protein ID: WP_140915931.1
Location: 371157..373559 (2403 bp)
Type: Others
Protein ID: WP_140915930.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
EE896_RS20590364067..365176+1110WP_003851511.1maltose/maltodextrin ABC transporter ATP-binding protein MalK-
EE896_RS20595365220..366521+1302WP_105099698.1maltoporin-
EE896_RS20600366626..367564+939WP_140915934.1maltose operon protein MalM-
EE896_RS20605368064..368408+345WP_140915933.1type II toxin-antitoxin system PrlF family antitoxinAntitoxin
EE896_RS20610368415..368885+471WP_140915932.1type II toxin-antitoxin system YhaV family toxinToxin
EE896_RS20615369073..371148-2076WP_140915931.14-alpha-glucanotransferase-
EE896_RS20620371157..373559-2403WP_140915930.1maltodextrin phosphorylase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideNon-Mobilizable plasmid-pla1..529303529303


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin endonuclease, YhaV

(12-148)

Antitoxin

PrlF antitoxin

(15-113)


Sequences

Toxin        


Download         Length: 157 a.a.        Molecular weight: 18275.71 Da        Isoelectric Point: 8.4645

>T142391 WP_140915932.1 NZ_CP045721:368415-368885 [Pantoea eucalypti]
MEDGTVINGWHVYVHPCFESQLIALTNEVESLRAKYPESYQRKATTKLLAAVFKVINSEICADPHHAKFRQGDTLGEQNK
HWFRAKFLMQYRLFFRFSEQHKTIILAWMNDAETKRAYGSKRDAYKVFSGMLHNGYPPDDWALLLKQSQDWDNTNS

Download         Length: 471 bp

>T142391 NZ_CP060674:c3903427-3903152 [Salmonella enterica]
ATGGGGCAAAGGGAAATTGAATATTCGGGACAGTTCCAGAAAGATGTAAAACGGGCACAAAAGCGTCATAAGGATGTCGG
CAAACTTAAAACACTTATGACGCTTCTGATTCACCACCCTTTTCCCCTTCCTGCCATTTATAAAGATCACCCGTTACAAG
GTTCATATAGCGGATACCGGGATGCCCATATTGAGCCTGACTGGATTCTTATTTATAAGATAACGGATGAATGCCTGCGA
TTTGAACGAACAGGAACGCATGCCGATTTATTTTAA

Antitoxin


Download         Length: 115 a.a.        Molecular weight: 12295.00 Da        Isoelectric Point: 4.2091

>AT142391 WP_140915933.1 NZ_CP045721:368064-368408 [Pantoea eucalypti]
MGTLTHTNISLRATSKLTARSQTTIPAAVRDAMNLQPGENIEYAVLPGGKVLITRQETVTDDDPVMASFLSFLAADMCNT
PANIKTLDRGLLTRITSLTEGMDVDLDAPLMDDE

Download         Length: 345 bp

>AT142391 NZ_CP060674:c3903690-3903430 [Salmonella enterica]
ATGGCTGCAAATGCGCTTGTTCGTGCCCGTATCGACGAAACGCTGAAGGACCAGGCGGCAGATGTCCTGGCTGAAATGGG
GTTAACCATTTCTGATTTGATACGGATTACACTGACTAAAGTTGCGCGTGAAAAGGCATTGCCTTTTGATTTGCGCATAC
CCAATGAGTTAACGTCACGAACGATAGAAAATAGCGAAGCTGGCGTTGATATTCATAAAGCCAAAGATGCTGATGATTTG
TTTGACCAGTTAGGGATCTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
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Antitoxin

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Source
ID
Structure
No matching records found

References