Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 661887..662614 Replicon chromosome
Accession NZ_CP045277
Organism Escherichia coli strain LAU-OXA

Toxin (Protein)


Gene name higB Uniprot ID U9ZMR4
Locus tag GBF15_RS03225 Protein ID WP_000550189.1
Coordinates 661887..662201 (+) Length 105 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag GBF15_RS03230 Protein ID WP_000560266.1
Coordinates 662198..662614 (+) Length 139 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GBF15_RS03205 658045..659031 - 987 WP_000617698.1 Gfo/Idh/MocA family oxidoreductase -
GBF15_RS03210 659110..659802 - 693 WP_000942548.1 vancomycin high temperature exclusion protein -
GBF15_RS03215 659879..660382 - 504 WP_001333820.1 M48 family metallopeptidase -
GBF15_RS03220 660467..661603 + 1137 WP_000018695.1 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG -
GBF15_RS03225 661887..662201 + 315 WP_000550189.1 type II toxin-antitoxin system toxin HigB Toxin
GBF15_RS03230 662198..662614 + 417 WP_000560266.1 type II toxin-antitoxin system antitoxin HigA Antitoxin
GBF15_RS03235 662659..664677 - 2019 WP_000121433.1 NADPH-dependent 2,4-dienoyl-CoA reductase -
GBF15_RS03240 665103..667454 - 2352 WP_089502950.1 alpha-glucosidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, mRNA interferase HigB

(20-92)

Antitoxin

Cro/C1-type helix-turn-helix domain

(84-135)


Sequences

Toxin        


Download         Length: 105 a.a.        Molecular weight: 12103.10 Da        Isoelectric Point: 10.0409

>T141610 WP_000550189.1 NZ_CP045277:661887-662201 [Escherichia coli]
MHLITQKALKDAAEKYPQHKTELVALGNTIAKGYFKKPESLKAVFPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKC
YIREVMTHKEYDFFTAVHRTKGKK

Download         Length: 315 bp

>T141610 NZ_CP060040:c2080669-2080451 [Burkholderia cenocepacia]
GTGCGCGATCAATTCAAGGCCAAGCTCGCCGAGCGGCTCGAGCATCCTCGTATCCCGTCAGCCAAATTGCATGGCCACCC
GGATCGCTACAAGATCAAGCTGCGCGGTGTCGGTTATCGCCTCGTCTACGAAGTGCGCGACGCGGAAGTCATCGTGCTGG
TGGTCGCGGTGGGCCGCCGCGAGCGTGATGCGGTCTATCTGGCTGAGATGAAACGCTAG

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 14995.42 Da        Isoelectric Point: 4.4547

>AT141610 WP_000560266.1 NZ_CP045277:662198-662614 [Escherichia coli]
MIAIADILQAGEKLTAVAPFLAGIQNEEQYTQALELVDHLLLNDPENPLLDLVCAKITAWEESAPEFAEFNAMAQAMPGG
IAVIRTLMDQYGLTLSDLPEIGSKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID

Download         Length: 417 bp

>AT141610 NZ_CP060040:c2080965-2080717 [Burkholderia cenocepacia]
ATGCCTCACACCATTCTGGCTAGCGTGACGGCTAGCGTCTCGGAGCTGAAGCGGAATCCGATGGGAACCGTTGCCGCGGG
CGAGGGTTTTCCGGTCGCCATCCTGAATCGCAACGAACCCGCGTTCTACTGCATTCCAGCGAAGACGTGGGAGGCGATGG
TCGAACGCCTGGAAGACACCGACGACAATGCGATGGCCGATTCGCGCGCCAGGGAGAAGATCGTCAAGGTCAATTTGAAT
GGCCTTTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6KMQ
PDB 5IFG
PDB 5YCL
PDB 6KML

Antitoxin

Source ID Structure

References